Browse Element(s) Details


Os.12233.1.S1_a_at

Description gb:AK068609.1
DB_XREF= gi:32978626
TID=Os.12233.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein GTP6 (P0523A04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156E05, full insert sequence.
FL= gb:AK068609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1353011/11Ras-related protein ARA-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13540Os.32620.1.S1_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13540Os.32620.2.S1_x_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13550OsAffx.28431.1.S1_s_at11/117+7761734..7766059hypothetical protein
LOC_Os07g13550OsAffx.28431.2.S1_at6/117+7761734..7766059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009873biological_processethylene mediated signaling pathway
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12233.1.S1_a_at--27--10551Chr07:7741878..7741902 (25 bp)
TTCTTTTCAATAGCAAGGGATATTA
LOC_Os07g13530
Os.12233.1.S1_a_at--480--10011Chr07:7741868..7741892 (25 bp)
TAGCAAGGGATATTAAGCAAAGACT
LOC_Os07g13530
Os.12233.1.S1_a_at--1141--2331Chr07:7741850..7741874 (25 bp)
AAAGACTTGCGGAGACTGATTCCAA
LOC_Os07g13530
Os.12233.1.S1_a_at--1021--2751Chr07:7741849..7741873 (25 bp)
AAGACTTGCGGAGACTGATTCCAAG
LOC_Os07g13530
Os.12233.1.S1_a_at--1--2771Chr07:7741749..7741851 (25 bp)
AAGACTGAGGATCGCACGATCAAGA
LOC_Os07g13530
Os.12233.1.S1_a_at--985--991Chr07:7741742..7741766 (25 bp)
AGGATCGCACGATCAAGATCAACAA
LOC_Os07g13530
Os.12233.1.S1_a_at--1162--1851Chr07:7741734..7741758 (25 bp)
ACGATCAAGATCAACAAACCAGAGG
LOC_Os07g13530
Os.12233.1.S1_a_at--992--371Chr07:7741725..7741749 (25 bp)
ATCAACAAACCAGAGGGTGATGCTG
LOC_Os07g13530
Os.12233.1.S1_a_at--155--2651Chr07:7741718..7741742 (25 bp)
AACCAGAGGGTGATGCTGAGGCCAC
LOC_Os07g13530
Os.12233.1.S1_a_at--757--4351Chr07:7741716..7741740 (25 bp)
CCAGAGGGTGATGCTGAGGCCACAA
LOC_Os07g13530
Os.12233.1.S1_a_at--1054--6131Chr07:7741713..7741737 (25 bp)
GAGGGTGATGCTGAGGCCACAACTT
LOC_Os07g13530
Target Sequence 
TTCTTTTCAATAGCAAGGGATATTAAGCAAAGACTTGCGGAGACTGATTCCAAGACTGAGGATCGCACGATCAAGATCAA
CAAACCAGAGGGTGATGCTGAGGCCACAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12233.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis