Browse Element(s) Details


OsAffx.28431.2.S1_at

Description tigr:9635.m01337
TID=OsAffx.28431.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g135506/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13540Os.32620.1.S1_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13540Os.32620.2.S1_x_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13550OsAffx.28431.1.S1_s_at11/117+7761734..7766059hypothetical protein
LOC_Os07g13550OsAffx.28431.2.S1_at6/117+7761734..7766059hypothetical protein
LOC_Os07g13560OsAffx.25367.1.S1_at2/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560OsAffx.13241.1.S1_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560Os.51887.1.S1_x_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13570OsAffx.16246.1.S1_at11/117+7783891..7784409hypothetical protein
LOC_Os07g13580Os.24085.1.S1_x_at11/117+7785085..7787103Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os07g13590Os.26753.1.S1_at11/117+7788517..7793327expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28431.2.S1_at--1038--9551Chr07:7762007..7762308 (25 bp)
TCTTAGACACGTACGGAATCACCGT
LOC_Os07g13550
OsAffx.28431.2.S1_at--527--5631Chr07:7762012..7762313 (25 bp)
GACACGTACGGAATCACCGTGGTAA
LOC_Os07g13550
OsAffx.28431.2.S1_at--11--3051Chr07:7762300..7762324 (25 bp)
AATCACCGTGGTAAAGAGGAATTGA
LOC_Os07g13550
OsAffx.28431.2.S1_at--533--6192Chr07:7762315..7762339 (25 bp)
GAGGAATTGAAGACGAATCTGGCAA
LOC_Os07g13550
OsAffx.28431.2.S1_at--846--5231Chr07:7762329..7762353 (25 bp)
GAATCTGGCAAGAATGGGTATCCCA
LOC_Os07g13550
OsAffx.28431.2.S1_at--465--811NONE
ATGGGTATCCCATCTATATATCATA
NONE
OsAffx.28431.2.S1_at--222--551NONE
ATCCCATCTATATATCATACAGCCA
NONE
OsAffx.28431.2.S1_at--13--251Chr05:16904127..16904147 (21 bp)
ATATCATACAGCCATTTTAGAGTTT
NONE
OsAffx.28431.2.S1_at--158--3571Chr07:7765171..7765195 (25 bp)
CATACAGCCATTTTAGAGTTTATTT
LOC_Os07g13550
OsAffx.28431.2.S1_at--979--3591NONE
CTTGGGAGAAAAAAGAGTCCTCTAT
NONE
OsAffx.28431.2.S1_at--1067--8051NONE
GGAGAAAAAAGAGTCCTCTATGCCA
NONE
Target Sequence 
TCTTAGACACGTACGGAATCACCGTGGTAAAGAGGAATTGAAGACGAATCTGGCAAGAATGGGTATCCCATCTATATATC
ATACAGCCATTTTAGAGTTTATTTTTAAAATAATTAAAGAAAACTTGGGAGAAAAAAGAGTCCTCTATGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28431.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis