Browse Element(s) Details


Os.31993.1.S1_at

Description gb:AK106355.1
DB_XREF= gi:32991564
TID=Os.31993.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0523A04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A05, full insert sequence.
FL= gb:AK106355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1347011/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13420OsAffx.22947.2.S1_x_at11/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.1.S1_x_at7/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.3.S1_x_at5/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13420OsAffx.22947.5.S1_x_at3/117+7692341..7696885retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g13430Os.27435.1.S1_x_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.27435.1.S1_at11/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.51856.1.S2_x_at3/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46985.1.S1_x_at2/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13430Os.46334.1.S1_at1/117+7700298..7704788transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13440Os.12306.1.S1_at3/117+7706895..7707119hypothetical protein
LOC_Os07g13450Os.25193.1.S1_at10/117+7708866..7709367expressed protein
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31993.1.S1_at--856--5891Chr07:7721963..7721987 (25 bp)
GAGCTGTAGGTTTGAGATTCTTTCG
LOC_Os07g13470
Os.31993.1.S1_at--625--6571Chr07:7721978..7722002 (25 bp)
GATTCTTTCGATGTGTGAGTTGCTA
LOC_Os07g13470
Os.31993.1.S1_at--219--7391Chr07:7721992..7722016 (25 bp)
GTGAGTTGCTAAGATAGTGGTCCAT
LOC_Os07g13470
Os.31993.1.S1_at--439--7471Chr07:7722008..7722032 (25 bp)
GTGGTCCATGGGTTGTAATAGTGAA
LOC_Os07g13470
Os.31993.1.S1_at--417--5531Chr07:7722030..7722054 (25 bp)
GAAAACTACAGCTTGTTAACAACGT
LOC_Os07g13470
Os.31993.1.S1_at--629--1551Chr07:7722039..7722063 (25 bp)
AGCTTGTTAACAACGTGCTTGTTTT
LOC_Os07g13470
Os.31993.1.S1_at--312--6471Chr07:7722065..7722089 (25 bp)
GATAAATTATTATACTACTCCTAGG
LOC_Os07g13470
Os.31993.1.S1_at--787--10411Chr07:7722074..7722098 (25 bp)
TTATACTACTCCTAGGTTGCAGCTC
LOC_Os07g13470
Os.31993.1.S1_at--90--3731Chr07:7722079..7722103 (25 bp)
CTACTCCTAGGTTGCAGCTCTAAAG
LOC_Os07g13470
Os.31993.1.S1_at--321--1011Chr07:7722087..7722111 (25 bp)
AGGTTGCAGCTCTAAAGTTCAGTTT
LOC_Os07g13470
Os.31993.1.S1_at--624--3391Chr07:7722093..7722117 (25 bp)
CAGCTCTAAAGTTCAGTTTGTGTCG
LOC_Os07g13470
Target Sequence 
GAGCTGTAGGTTTGAGATTCTTTCGATGTGTGAGTTGCTAAGATAGTGGTCCATGGGTTGTAATAGTGAAAACTACAGCT
TGTTAACAACGTGCTTGTTTTAGATAAATTATTATACTACTCCTAGGTTGCAGCTCTAAAGTTCAGTTTGTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis