Browse Element(s) Details


Os.57392.1.S1_at

Description gb:AK111440.1
DB_XREF= gi:32996649
TID=Os.57392.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A06, full insert sequence.
FL= gb:AK111440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1719011/11F-box domain containing protein, expressed
LOC_Os09g175302/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17146Os.53687.1.S1_at10/119+10519071..10520662expressed protein
LOC_Os09g17152Os.53268.1.S1_at11/119+10521953..10523536F-box domain containing protein, expressed
LOC_Os09g17160Os.33878.1.S1_at3/119+10528066..10529378hypothetical protein
LOC_Os09g17170OsAffx.21779.1.S1_at9/119+10536403..10537957retrotransposon protein, putative, unclassified
LOC_Os09g17170OsAffx.21779.3.S1_at3/119+10536403..10537957retrotransposon protein, putative, unclassified
LOC_Os09g17180NANA9+10540838..10544059hypothetical protein
LOC_Os09g17190Os.57392.1.S1_at11/119+10544875..10546370F-box domain containing protein, expressed
LOC_Os09g17200Os.38395.3.S1_x_at9/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.2.S1_x_at7/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.4.S1_x_at7/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.5.S1_at2/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17200Os.38395.1.S1_at1/119+10551882..10559000transposon protein, putative, Mutator sub-class
LOC_Os09g17210OsAffx.29887.1.S1_at11/119+10565285..10566313hypothetical protein
LOC_Os09g17220OsAffx.6313.1.S1_at11/119+10569471..10569870hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57392.1.S1_at--691--1931Chr09:10545381..10545405 (25 bp)
ACGGAGTTCTCGCTGGTGACGTTCC
LOC_Os09g17190
Os.57392.1.S1_at--656--5671Chr09:10545354..10545378 (25 bp)
GACATCATCCGGGAGAACTACCACA
LOC_Os09g17190
Os.57392.1.S1_at--731--2532Chr09:10731641..10731665 (25 bp)
AACTACCACATGACGACGTTCCGGA
LOC_Os09g17530
Os.57392.1.S1_at--480--7412Chr09:10731589..10731613 (25 bp)
GTGTTCTCCGCGTGATAGGCAACGA
LOC_Os09g17530
Os.57392.1.S1_at--146--1891Chr09:10545054..10545078 (25 bp)
ACGATGACGGTGGAGCGCCACCATG
LOC_Os09g17190
Os.57392.1.S1_at--425--7531Chr09:10545009..10545033 (25 bp)
GTGGCTTACCCGTACGAGTTGCCTT
LOC_Os09g17190
Os.57392.1.S1_at--885--1871Chr09:10544996..10545020 (25 bp)
ACGAGTTGCCTTTGCTGCGGGCTTT
LOC_Os09g17190
Os.57392.1.S1_at--312--6311Chr09:10544951..10544975 (25 bp)
GATGAGAACAACGACTTGGCAACTT
LOC_Os09g17190
Os.57392.1.S1_at--551--2051Chr09:10544938..10544962 (25 bp)
ACTTGGCAACTTGGCGTTGGACGAT
LOC_Os09g17190
Os.57392.1.S1_at--1148--7851Chr09:10544893..10544917 (25 bp)
GGTTTGATATCAACTGTTCGTGCAC
LOC_Os09g17190
Os.57392.1.S1_at--490--6711Chr09:10544878..10544902 (25 bp)
GTTCGTGCACGATCGATTCATCGGC
LOC_Os09g17190
Target Sequence 
ACGGAGTTCTCGCTGGTGACGTTCCCGGACATCATCCGGGAGAACTACCACATGACGACGTTCCGGATCATCGCCGGCGG
CGACGGCGCCATGCGTGTTCTCCGCGTGATAGGCAACGACCTCAAGGTGTTCACGCAGCTGGCGGGTAGCGGCGTTGAGT
GGGTGCTGGAGAAGCTGGTGCGGTTGCCGGAGGCGACGCGGGGATTGCCGGGGCACGAGGAGAGGTACTTCGAGCAGAAC
GAAGCCATGATCGTCGCGGCGGACGCGGCGTACGTGCTCCTGACGCCGTCGGTGGAGAAGACGTGGCTCTTCTCCGTCGA
GCTGGAGACGATGACGGTGGAGCGCCACCATGAGAGGAACAAGTACGCGGGGGTGGCTTACCCGTACGAGTTGCCTTTGC
TGCGGGCTTTGCACGCGGGCGGCAGATATCGATGAGAACAACGACTTGGCAACTTGGCGTTGGACGATGATATGGAATGA
CATTGTTTGGTTTGATATCAACTGTTCGTGCACGATCGATTCATCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis