Browse Element(s) Details


Os.53687.1.S1_at

Description gb:AK073913.1
DB_XREF= gi:32983936
TID=Os.53687.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076F19, full insert sequence.
FL= gb:AK073913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1714610/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17130OsAffx.17753.1.S1_at11/119+10492871..10494993hypothetical protein
LOC_Os09g17140NANA9+10506254..10507537retrotransposon protein, putative, unclassified
LOC_Os09g17146Os.53687.1.S1_at10/119+10519071..10520662expressed protein
LOC_Os09g17152Os.53268.1.S1_at11/119+10521953..10523536F-box domain containing protein, expressed
LOC_Os09g17160Os.33878.1.S1_at3/119+10528066..10529378hypothetical protein
LOC_Os09g17170OsAffx.21779.1.S1_at9/119+10536403..10537957retrotransposon protein, putative, unclassified
LOC_Os09g17170OsAffx.21779.3.S1_at3/119+10536403..10537957retrotransposon protein, putative, unclassified
LOC_Os09g17180NANA9+10540838..10544059hypothetical protein
LOC_Os09g17190Os.57392.1.S1_at11/119+10544875..10546370F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53687.1.S1_at--149--5971Chr09:10519602..10519626 (25 bp)
GAGAACGTCCGCGAGAGCTACGACA
LOC_Os09g17146
Os.53687.1.S1_at--1035--5871Chr09:10519588..10519612 (25 bp)
GAGCTACGACAAGCGGACGTTCCGG
LOC_Os09g17146
Os.53687.1.S1_at--48--3531Chr09:10519537..10519561 (25 bp)
CATGCGCGTGGTCCGTGTGATAAAC
LOC_Os09g17146
Os.53687.1.S1_at--150--1451Chr09:10519384..10519408 (25 bp)
AGAAGCCATCGTTGTCGCGGCGAGC
LOC_Os09g17146
Os.53687.1.S1_at--1149--3971Chr09:10519334..10519358 (25 bp)
CGGTGGAGGACACTTGGCTCTTCTC
LOC_Os09g17146
Os.53687.1.S1_at--1039--8291Chr09:10519219..10519243 (25 bp)
GGCTTTGCAGGCTACGGATGCTGAT
LOC_Os09g17146
Os.53687.1.S1_at--918--6571Chr09:10519154..10519178 (25 bp)
GATTCTGGCTGGTCCAAAACTGTTT
LOC_Os09g17146
Os.53687.1.S1_at--954--3871Chr09:10519135..10519159 (25 bp)
CTGTTTCGACAGTTGCATGCATTCA
LOC_Os09g17146
Os.53687.1.S1_at--557--6671Chr09:10519124..10519148 (25 bp)
GTTGCATGCATTCACTTTGCGTTGC
LOC_Os09g17146
Os.53687.1.S1_at--427--10711Chr09:10519108..10519132 (25 bp)
TTGCGTTGCATGATGTTTCAAGCGC
LOC_Os09g17146
Os.53687.1.S1_at--316--4691Chr09:10519071..10519094 (24 bp)
GCGGAATATTGATGCCTTAGGTCGT
NONE
Target Sequence 
GAGAACGTCCGCGAGAGCTACGACAAGCGGACGTTCCGGATCATCGCCGGCGGCGACGGCGTCGCCATGCGCGTGGTCCG
TGTGATAAACAACGACCTCAAGGTGTTCGCGCAGCTCGACGGCGACGGCGAGTGGGTGCTCGAGAAGCGGGTTTGGTTGC
CGGCGGCGGCACGGGGCCTGCCAGGGTACGACGAGGGGTACTTCCAGGAGCAGAACGGAGAAGCCATCGTTGTCGCGGCG
AGCGCGGCGTATGTGCTGCTGACGCCGCCGGTGGAGGACACTTGGCTCTTCTCCGTCGAGCTGGAGACGATGGCGGTGGA
GCGGTGGCATGAGAGGAACAAGTATGCCGGGGTGGCTTACCCCTGCGAGTTGCCATGGCCGCGGGCTTTGCAGGCTACGG
ATGCTGATCAGATTAGTGGGAGGAGACGATGCTGATGAGATGTGGATTGATTCTGGCTGGTCCAAAACTGTTTCGACAGT
TGCATGCATTCACTTTGCGTTGCATGATGTTTCAAGCGCAATAATATTGCTGGCGGAATATTGATGCCTTAGGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis