Browse Element(s) Details


OsAffx.23521.1.S1_at

Description tigr:9629.m03354
TID=OsAffx.23521.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3562011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35590OsAffx.23520.2.S1_s_at11/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.1.S1_at10/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.2.S1_at8/111+20016306..20019801hypothetical protein
LOC_Os01g35600Os.33878.1.S1_at2/111+20030003..20031908hypothetical protein
LOC_Os01g35610OsAffx.17756.3.S1_at8/111+20036915..20037289hypothetical protein
LOC_Os01g35610OsAffx.17756.1.S1_x_at3/111+20036915..20037289hypothetical protein
LOC_Os01g35620OsAffx.23521.1.S1_at11/111+20042316..20043107hypothetical protein
LOC_Os01g35630NANA1+20043699..20044118Transposable element protein, putative, Retrotrans_gag
LOC_Os01g35640NANA1+20067046..20070814retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23521.1.S1_at--324--6691Chr01:20042934..20042958 (25 bp)
GTTGCCATTCCCTAAGCGATTCAAG
LOC_Os01g35620
OsAffx.23521.1.S1_at--127--4631Chr01:20042544..20042943 (25 bp)
GCGATTCAAGAAGCCGTCGATCCAT
LOC_Os01g35620
OsAffx.23521.1.S1_at--295--2671Chr01:20042867..20042933 (25 bp)
AAGCCGTCGATCCATATTCACGTGA
LOC_Os01g35620
OsAffx.23521.1.S1_at--610--131Chr01:20042852..20042876 (25 bp)
ATTCACGTGATGCTATTGGATACTA
LOC_Os01g35620
OsAffx.23521.1.S1_at--342--7951Chr01:20042835..20042859 (25 bp)
GGATACTATGCAAGTGTCCACCTAT
LOC_Os01g35620
OsAffx.23521.1.S1_at--563--2851Chr01:20042824..20042848 (25 bp)
AAGTGTCCACCTATGCACGTTACCT
LOC_Os01g35620
OsAffx.23521.1.S1_at--608--2411Chr01:20042653..20042677 (25 bp)
AAAAATTCGACCAAGCCTTCTGCGA
LOC_Os01g35620
OsAffx.23521.1.S1_at--82--1631Chr01:20042542..20042566 (25 bp)
AGCTGGCCAACTCGTCGATCCATTA
LOC_Os01g35620
OsAffx.23521.1.S1_at--554--7931Chr01:20042439..20042463 (25 bp)
GGATTCAGACAAGGATACACCGCTC
LOC_Os01g35620
OsAffx.23521.1.S1_at--953--3411Chr01:20042434..20042458 (25 bp)
CAGACAAGGATACACCGCTCATCTT
LOC_Os01g35620
OsAffx.23521.1.S1_at--968--6931Chr01:20042359..20042383 (25 bp)
GTAGTATCCATCTCCGTATCAACGA
LOC_Os01g35620
Target Sequence 
GTTGCCATTCCCTAAGCGATTCAAGAAGCCGTCGATCCATATTCACGTGATGCTATTGGATACTATGCAAGTGTCCACCT
ATGCACGTTACCTCAAGGATATCCTCAACAACAAACGGCCACTACCAACAACCGAGGTGGTCAAGCTAACGGAGGAGTGC
AGCAAAGCCATACTCCACAAGCTCCCGGAAAAGAAGAAAGACCCGAGGTGTCCCACGATCACCTGCTTGATCGGGACACA
AAAATTCGACCAAGCCTTCTGCGACCTTGGAGCCAGCGTGAGCATCATGCCCAAGGAAGTCTTCGACAAGCTCAATTTCA
CGGTGTTGGCACCAACACCGATGCGCCTGCAGCTGGCCAACTCGTCGATCCATTACCCGGCTGGGATAGCGGAGGATGTG
CCGGTTAAGATACGGGATTTCTTCATCTCAGTTGACTTTGTGGTGCTAGACATGGATTCAGACAAGGATACACCGCTCAT
CTTGGGGCGTCCGTTCCTTAGCACCGCGAAGGCCAACATTGACGTGGGAACGGGTAGTATCCATCTCCGTATCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis