Browse Element(s) Details


OsAffx.23520.2.S1_at

Description tigr:9629.m03351
TID=OsAffx.23520.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g355908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35550NANA1+19994363..19995652retrotransposon protein, putative, unclassified
LOC_Os01g35560NANA1+19999370..20002862retrotransposon protein, putative, unclassified
LOC_Os01g35580Os.37071.2.S1_a_at11/111+20008672..20013157expressed protein
LOC_Os01g35580OsAffx.3177.1.S1_at2/111+20008672..20013157expressed protein
LOC_Os01g35590OsAffx.23520.2.S1_s_at11/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.1.S1_at10/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.2.S1_at8/111+20016306..20019801hypothetical protein
LOC_Os01g35600Os.33878.1.S1_at2/111+20030003..20031908hypothetical protein
LOC_Os01g35610OsAffx.17756.3.S1_at8/111+20036915..20037289hypothetical protein
LOC_Os01g35610OsAffx.17756.1.S1_x_at3/111+20036915..20037289hypothetical protein
LOC_Os01g35620OsAffx.23521.1.S1_at11/111+20042316..20043107hypothetical protein
LOC_Os01g35630NANA1+20043699..20044118Transposable element protein, putative, Retrotrans_gag

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23520.2.S1_at--570--1511NONE
AGCAGCCGCTCGGAGTGCATGAGAA
NONE
OsAffx.23520.2.S1_at--116--3391NONE
CAGCCGCTCGGAGTGCATGAGAATT
NONE
OsAffx.23520.2.S1_at--888--4511NONE
GCCGCTCGGAGTGCATGAGAATTGC
NONE
OsAffx.23520.2.S1_at--437--4811Chr01:20019373..20019393 (21 bp)
GCTCGGAGTGCATGAGAATTGCTAT
LOC_Os01g35590
OsAffx.23520.2.S1_at--471--7331Chr01:20019376..20019400 (25 bp)
GTGCATGAGAATTGCTATGGTCCTT
LOC_Os01g35590
OsAffx.23520.2.S1_at--449--691Chr01:20019380..20019404 (25 bp)
ATGAGAATTGCTATGGTCCTTGGGT
LOC_Os01g35590
OsAffx.23520.2.S1_at--230--8891Chr01:20019381..20019405 (25 bp)
TGAGAATTGCTATGGTCCTTGGGTG
LOC_Os01g35590
OsAffx.23520.2.S1_at--116--10551Chr01:20019387..20019411 (25 bp)
TTGCTATGGTCCTTGGGTGGGTCAT
LOC_Os01g35590
OsAffx.23520.2.S1_at--634--4871Chr01:20019389..20019413 (25 bp)
GCTATGGTCCTTGGGTGGGTCATCA
LOC_Os01g35590
OsAffx.23520.2.S1_at--411--10111Chr01:20019391..20019415 (25 bp)
TATGGTCCTTGGGTGGGTCATCATG
LOC_Os01g35590
OsAffx.23520.2.S1_at--853--8611Chr01:20019400..20019606 (25 bp)
TGGGTGGGTCATCATGGTGGCTCAA
LOC_Os01g35590
Target Sequence 
AGCAGCCGCTCGGAGTGCATGAGAATTGCTATGGTCCTTGGGTGGGTCATCATGGTGGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23520.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis