Browse Element(s) Details


OsAffx.3177.1.S1_at

Description tigr:9631.m00883
TID=OsAffx.3177.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0983011/11expressed protein
LOC_Os09g013005/11hAT family dimerisation domain containing protein
LOC_Os01g355802/11expressed protein
LOC_Os01g358302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09310Os.6725.1.S1_at11/113+4841301..4845851expressed protein
LOC_Os03g09810NANA3+4855628..4859260Polyamine oxidase precursor, putative
LOC_Os03g09820OsAffx.25028.1.S1_at11/113+4865505..4866431Transcription factor TFIIB repeat family protein
LOC_Os03g09830OsAffx.3177.1.S1_at11/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_x_at1/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_at1/113+4868609..4871374expressed protein
LOC_Os03g09840Os.15761.1.S1_at11/113+4873640..4876148C2 domain-containing protein, putative, expressed
LOC_Os03g09850OsAffx.3178.1.S1_at11/113+4881472..4882725auxin-responsive protein, putative, expressed
LOC_Os03g09860Os.18202.1.S1_at11/113+4885363..4887908acetyltransferase, GNAT family protein, expressed
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g09880Os.49607.1.S1_at11/113+4892431..4893180membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3177.1.S1_at--975--1614Chr03:4870069..4870093 (25 bp)
AGCTGGTGGCCATGTGTTGATCTGA
LOC_Os03g09830
OsAffx.3177.1.S1_at--737--7557Chr10:17505996..17506497 (25 bp)
GTGGCCATGTGTTGATCTGAATTTT
NONE
OsAffx.3177.1.S1_at--180--7954Chr03:4870100..4870124 (25 bp)
GGATACAAGGATCTGATATTCTGCC
LOC_Os03g09830
OsAffx.3177.1.S1_at--759--3211Chr03:4870105..4870129 (25 bp)
CAAGGATCTGATATTCTGCCTTTAA
LOC_Os03g09830
OsAffx.3177.1.S1_at--826--9471Chr03:4870119..4870143 (25 bp)
TCTGCCTTTAAGTGCTGAATATACA
LOC_Os03g09830
OsAffx.3177.1.S1_at--573--10371Chr03:4870145..4870428 (25 bp)
TTTTTTCAGGCCACTTAGATCGAAC
LOC_Os03g09830
OsAffx.3177.1.S1_at--35--10012Chr03:4870420..4870443 (24 bp)
TAGATCGAACTTCTATGTCCCCTGA
LOC_Os03g09830
OsAffx.3177.1.S1_at--1141--752Chr03:4870433..4870457 (25 bp)
ATGTCCCCTGAAACCCTTGAGGCAA
LOC_Os03g09830
OsAffx.3177.1.S1_at--634--2612Chr03:4870444..4870468 (25 bp)
AACCCTTGAGGCAAGTATATGTTTG
LOC_Os03g09830
OsAffx.3177.1.S1_at--10--6472Chr03:4870477..4870501 (25 bp)
GATAATTGGATTTGACGATGATGAA
LOC_Os03g09830
OsAffx.3177.1.S1_at--548--2932Chr03:4870579..4870602 (24 bp)
AAGGCTATGCAACAGAAGGATCTCG
LOC_Os03g09830
Target Sequence 
AGCTGGTGGCCATGTGTTGATCTGAATTTTAGGATACAAGGATCTGATATTCTGCCTTTAAGTGCTGAATATACATTTTT
TTCAGGCCACTTAGATCGAACTTCTATGTCCCCTGAAACCCTTGAGGCAAGTATATGTTTGAAAGATTGGATAATTGGAT
TTGACGATGATGAAAAAGGCTATGCAACAGAAGGATCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis