Browse Element(s) Details


Os.6725.1.S1_at

Description gb:AK069459.1
DB_XREF= gi:32979483
TID=Os.6725.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019D20, full insert sequence.
FL= gb:AK069459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0931011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09260Os.56967.1.S1_s_at10/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09260Os.56967.1.S1_at8/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270Os.54409.1.S1_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270OsAffx.12801.1.S1_s_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09280Os.5252.1.S1_at11/113+4826358..4832948Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os03g09290NANA3+4834333..4836648expressed protein
LOC_Os03g09300NANA3+4837255..4839490Pumilio-family RNA binding repeat containing protein
LOC_Os03g09310Os.6725.1.S1_at11/113+4841301..4845851expressed protein
LOC_Os03g09810NANA3+4855628..4859260Polyamine oxidase precursor, putative
LOC_Os03g09820OsAffx.25028.1.S1_at11/113+4865505..4866431Transcription factor TFIIB repeat family protein
LOC_Os03g09830OsAffx.3177.1.S1_at11/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_x_at1/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_at1/113+4868609..4871374expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6725.1.S1_at--767--5031Chr03:4841907..4841931 (25 bp)
GCAGCACAAAATTCCTTAAGCCAAA
LOC_Os03g09310
Os.6725.1.S1_at--246--2511Chr03:4841883..4841907 (25 bp)
AACATCCATTCGGTTGATTCCCTCA
LOC_Os03g09310
Os.6725.1.S1_at--640--5811Chr03:4841855..4841879 (25 bp)
GACCGCTCATGTCGAGCCAGAGCAT
LOC_Os03g09310
Os.6725.1.S1_at--746--10171Chr03:4841782..4841806 (25 bp)
TATAATTCCGGCTATTAGTCCGAGC
LOC_Os03g09310
Os.6725.1.S1_at--499--3271Chr03:4841748..4841772 (25 bp)
CAACATCCCGTTGGCATCAAGAATC
LOC_Os03g09310
Os.6725.1.S1_at--202--4251Chr03:4841706..4841730 (25 bp)
CCTGTTCAGACTCGGTATGGTGGCT
LOC_Os03g09310
Os.6725.1.S1_at--391--8491Chr03:4841686..4841710 (25 bp)
TGGCTTGGCTGACTACTATGGACTG
LOC_Os03g09310
Os.6725.1.S1_at--781--6111Chr03:4841611..4841635 (25 bp)
GAGTGCACACACATCTTCCAGATCA
LOC_Os03g09310
Os.6725.1.S1_at--696--2351Chr03:4841587..4841611 (25 bp)
AAAGCTCTATTCTGCAGATCCCCTG
LOC_Os03g09310
Os.6725.1.S1_at--514--4731Chr03:4841559..4841583 (25 bp)
GCTGTCTCCCGAGCATCAGATAAGA
LOC_Os03g09310
Os.6725.1.S1_at--150--8331Chr03:4841400..4841424 (25 bp)
GGCTGCTGATCCTGTGTAAATTCCA
LOC_Os03g09310
Target Sequence 
GCAGCACAAAATTCCTTAAGCCAAAACATCCATTCGGTTGATTCCCTCAGTCGACCGCTCATGTCGAGCCAGAGCATGGG
TATCTCAGGAGTATTAAATTTGTACCAAGCTGCTTCAAGCCAGANTATAATTCCGGCTATTAGTCCGAGCCCACTGAGCC
AACATCCCGTTGGCATCAAGAATCAGACCCTGAATACACCGCCTGTTCAGACTCGGTATGGTGGCTTGGCTGACTACTAT
GGACTGTCCTCCGGCAGACCTAGGCCCGACTCTGTATCTCCTGGNATCAAGTGTTACNGAGTGCACACACATCTTCCAGA
TCAAAGCTCTATTCTGCAGATCCCCTGGCTGCTGTCTCCCGAGCATCAGATAAGAAGGGTTCGTCTTACAACTATTNCGT
TGTCAAGTATGTCGACATATAATCCTAATCCATAAATAACCTCGATATGGTTCTTATGCCCCCTCCNTCTGGGGGACTAA
CATGTAAATTTTAGTTTGAGGCCAAGCAGAGGCTGCTGATCCTGTGTAAATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis