Browse Element(s) Details


Os.56967.1.S1_s_at

Description gb:AK110648.1
DB_XREF= gi:32995857
TID=Os.56967.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-D10, full insert sequence.
FL= gb:AK110648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0926010/11ubiquitin-specific protease 26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed
LOC_Os03g09260Os.56967.1.S1_s_at10/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09260Os.56967.1.S1_at8/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270Os.54409.1.S1_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270OsAffx.12801.1.S1_s_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09280Os.5252.1.S1_at11/113+4826358..4832948Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os03g09290NANA3+4834333..4836648expressed protein
LOC_Os03g09300NANA3+4837255..4839490Pumilio-family RNA binding repeat containing protein
LOC_Os03g09310Os.6725.1.S1_at11/113+4841301..4845851expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56967.1.S1_s_at--1013--311Chr03:4816215..4816239 (25 bp)
ATACTGCAGTGCCTTTACATGAACA
LOC_Os03g09260
Os.56967.1.S1_s_at--160--2971Chr03:4816343..4816367 (25 bp)
AATGGCTTTCATTGATTCGGCACCT
LOC_Os03g09260
Os.56967.1.S1_s_at--26--5651Chr03:4816407..4816431 (25 bp)
GACAGCCATGAATTCCTCACATTAT
LOC_Os03g09260
Os.56967.1.S1_s_at--1022--10811Chr03:4816434..4816458 (25 bp)
TTGTCTTTGCTCGAGGGTTCACTAA
LOC_Os03g09260
Os.56967.1.S1_s_at--835--6751Chr03:4816450..4816474 (25 bp)
GTTCACTAAGTCATTCCAAGGTTCC
LOC_Os03g09260
Os.56967.1.S1_s_at--195--3611Chr03:4816487..4816511 (25 bp)
CATTGTGCAGCATTTGTTCCGTGGA
LOC_Os03g09260
Os.56967.1.S1_s_at--108--8191Chr03:4816509..4816533 (25 bp)
GGAAGTGTGTCCCATGTTACTCGGT
LOC_Os03g09260
Os.56967.1.S1_s_at--476--6771NONE
GTTACTCGGTGCTCATCATGTGGAA
NONE
Os.56967.1.S1_s_at--14--2891Chr03:4817192..4817216 (25 bp)
AAGGGTAGATGCCACTCGTTGCATA
LOC_Os03g09260
Os.56967.1.S1_s_at--84--9671Chr03:4817226..4817250 (25 bp)
TCACTTCCTCCTGTTGTTAATTTTC
LOC_Os03g09260
Os.56967.1.S1_s_at--486--8971Chr03:4817254..4817278 (25 bp)
TGAAACGCTATGTATTCCTCCCAAA
LOC_Os03g09260
Target Sequence 
ATACTGCAGTGCCTTTACATGAACACCTCCTTCCGCTTGGGCATTTTCTCTCTAGAGCCCGACATCTTGAAGATGCACCC
TGTGCTGGATCAGCTTGCTCGGTTATTCGCTCAGCTACAGTCCAGCAAAATGGCTTTCATTGATTCGGCACCTTTTATAA
AAACCTTGGAATTAGATAATGGTGTCCAGCAGGACAGCCATGAATTCCTCACATTATTTTTGTCTTTGCTCGAGGGTTCA
CTAAGTCATTCCAAGGTTCCAGGGGCTAGAACCATTGTGCAGCATTTGTTCCGTGGAAGTGTGTCCCATGTTACTCGGTG
CTCATCATGTGGAAGGGATTCCGAAGCATCTTCAAAGATGGAAGACTTTTACGAACTGGAGCTTAACATTAAAGGTTTAA
ATAATCTAGAACAAAGTTTGGATGACTATTTGAGTACTGAGGCACTGGATGGAGAGAACCAGTACTTCTGTGAGTCATGT
CAGAAAAGGGTAGATGCCACTCGTTGCATAAAACTTCGCTCACTTCCTCCTGTTGTTAATTTTCAGCTGAAACGCTATGT
ATTCCTCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56967.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis