Browse Element(s) Details


Os.7974.2.S1_at

Description gb:AK068957.1
DB_XREF= gi:32978981
TID=Os.7974.2
CNT=36
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23061 chloroplast photosystem I reaction center subunit II precursor-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003M17, full insert sequence.
FL= gb:AK068957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0922011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein
LOC_Os03g09210Os.22368.1.S1_at11/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09210OsAffx.25026.1.S1_at10/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed
LOC_Os03g09260Os.56967.1.S1_s_at10/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09260Os.56967.1.S1_at8/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270Os.54409.1.S1_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270OsAffx.12801.1.S1_s_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7974.2.S1_at--965--2111Chr03:4799256..4799280 (25 bp)
ACAGTTGTTGTATCCGTTGTTCGGA
LOC_Os03g09220
Os.7974.2.S1_at--234--6911Chr03:4799265..4799289 (25 bp)
GTATCCGTTGTTCGGAAATCTGAAG
LOC_Os03g09220
Os.7974.2.S1_at--179--8991Chr03:4799285..4799309 (25 bp)
TGAAGTTTAAACTATAAGCCTCTTT
LOC_Os03g09220
Os.7974.2.S1_at--558--2031Chr03:4799295..4799319 (25 bp)
ACTATAAGCCTCTTTTTGGCTTAAG
LOC_Os03g09220
Os.7974.2.S1_at--526--10871Chr03:4799310..4799334 (25 bp)
TTGGCTTAAGTGAATGCAGCTCCTA
LOC_Os03g09220
Os.7974.2.S1_at--781--3011Chr03:4799322..4799346 (25 bp)
AATGCAGCTCCTAGATTTTGCCAGA
LOC_Os03g09220
Os.7974.2.S1_at--669--1611Chr03:4799418..4799442 (25 bp)
AGCTGTATGTTCCTCGTGGCCATGA
LOC_Os03g09220
Os.7974.2.S1_at--958--10111Chr03:4799423..4799447 (25 bp)
TATGTTCCTCGTGGCCATGATCGCA
LOC_Os03g09220
Os.7974.2.S1_at--133--9431Chr03:4799431..4799455 (25 bp)
TCGTGGCCATGATCGCAGCTACTAA
LOC_Os03g09220
Os.7974.2.S1_at--105--8451Chr03:4799435..4799459 (25 bp)
GGCCATGATCGCAGCTACTAAGTAA
LOC_Os03g09220
Os.7974.2.S1_at--913--9891Chr03:4799450..4799474 (25 bp)
TACTAAGTAAGTTGCGATTGCGCTT
LOC_Os03g09220
Target Sequence 
ACAGTTGTTGTATCCGTTGTTCGGAAATCTGAAGTTTAAACTATAAGCCTCTTTTTGGCTTAAGTGAATGCAGCTCCTAG
ATTTTGCCAGANCTGCGTTTGCTGGCGAATGTCCANGAGCATTCCATGNGAGGTACCCCCANCCTCACGTGTACATATGA
NAAGCTGTATGTTCCTCGTGGCCATGATCGCAGCTACTAAGTAAGTTGCGATTGCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7974.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis