Browse Element(s) Details


OsAffx.12801.1.S1_s_at

Description tigr:9631.m00879
TID=OsAffx.12801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ubiquitin-specific protease 26
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0927011/11ubiquitin-specific protease 26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed
LOC_Os03g09260Os.56967.1.S1_s_at10/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09260Os.56967.1.S1_at8/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270Os.54409.1.S1_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270OsAffx.12801.1.S1_s_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09280Os.5252.1.S1_at11/113+4826358..4832948Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os03g09290NANA3+4834333..4836648expressed protein
LOC_Os03g09300NANA3+4837255..4839490Pumilio-family RNA binding repeat containing protein
LOC_Os03g09310Os.6725.1.S1_at11/113+4841301..4845851expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12801.1.S1_s_at--945--6493Chr03:4821668..4821692 (25 bp)
GATATCCAGGTTTATCTTGTCCGTG
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--869--3611Chr03:4821683..4821707 (25 bp)
CTTGTCCGTGGTAAAGAAGCGCCAA
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--999--2831Chr03:4821707..4821731 (25 bp)
AAGTCAATTAGAGAGGCATCGGCAG
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--887--1591Chr03:4821730..4821754 (25 bp)
AGCTGTTCCTGTACCAGATCGTAGG
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--620--6371Chr03:4821746..4821770 (25 bp)
GATCGTAGGACTTCAAAGCGTTCCC
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--779--2111Chr03:4821761..4821785 (25 bp)
AAGCGTTCCCGGAGAACAACCTCAG
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--223--5511Chr03:4821774..4821798 (25 bp)
GAACAACCTCAGGAAATTCGATCAG
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--67--5571Chr03:4821802..4821826 (25 bp)
GAAAGTCTCTGGTTCTACAACCGTA
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--583--6291Chr03:4822505..4822529 (25 bp)
GATGATTTTGCTACTCTTGCTGACA
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--518--10291Chr03:4822729..4822753 (25 bp)
TTTCGTGGGACTCTGTTGACATCTA
LOC_Os03g09270
OsAffx.12801.1.S1_s_at--1028--6651Chr03:4822743..4822767 (25 bp)
GTTGACATCTAGTGCTTCAGCTCAG
LOC_Os03g09270
Target Sequence 
GATATCCAGGTTTATCTTGTCCGTGGTAAAGAAGCGCCAAAGTCAATTAGAGAGGCATCGGCAGCTGTTCCTGTACCAGA
TCGTAGGACTTCAAAGCGTTCCCGGAGAACAACCTCAGGAAATTCGATCAGTTTGAAAGTCTCTGGTTCTACAACCGTAT
ATCAGTTGAAACTCATGATATGGGAATCTTTAGGGATTGTTAAGGAGAACCAGGAGCTTCACAAAGGCTCTGTTGAGATT
GAAGATGATTTTGCTACTCTTGCTGACAAGTGTATTTTTCCTGGAGATGTTCTATGGGTTAAAGATTCCGAAATCTACGA
GAACCGTGACATAGCAGATGAAATTTCGGAGCAGAAGGTTGTAGTACAGACTGAGGAAGGCTTTCGTGGGACTCTGTTGA
CATCTAGTGCTTCAGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12801.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis