Browse Element(s) Details


Os.10937.1.S1_at

Description gb:AB012107.1
DB_XREF= gi:3077789
GEN=RINO1
TID=Os.10937.1
CNT=44
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10937 (NCBI UniGene Cluster)
DEF=Oryza sativa RINO1 mRNA for myo-inositol phosphate synthase, complete cds.
PROD=myo-inositol phosphate synthase
FL= gb:AB012107.1 gb:AK058750.1 gb:AK103501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0925010/11Inositol-3-phosphate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09210Os.22368.1.S1_at11/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09210OsAffx.25026.1.S1_at10/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed
LOC_Os03g09260Os.56967.1.S1_s_at10/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09260Os.56967.1.S1_at8/113+4815259..4817300ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270Os.54409.1.S1_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09270OsAffx.12801.1.S1_s_at11/113+4821393..4823472ubiquitin-specific protease 26, putative, expressed
LOC_Os03g09280Os.5252.1.S1_at11/113+4826358..4832948Chitin-inducible gibberellin-responsive protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006021biological_processmyo-inositol biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0004512molecular_functioninositol-3-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10937.1.S1_at--24--6831Chr03:4805644..4805668 (25 bp)
GTATGTGCCGTATGTTGGAGACAGC
LOC_Os03g09250
Os.10937.1.S1_at--238--4511Chr03:4805524..4805548 (25 bp)
GCCGATCATTCTTGATCTGGTGCTC
LOC_Os03g09250
Os.10937.1.S1_at--981--1711Chr03:4805165..4805189 (25 bp)
ACCAGTGGTGAACGCCCTGGCAAAG
LOC_Os03g09250
Os.10937.1.S1_at--157--8911Chr03:4805126..4805150 (25 bp)
TGAGAACATCATGAGGGCCTGCGTT
LOC_Os03g09250
Os.10937.1.S1_at--577--4231Chr03:4805044..4805068 (25 bp)
CCGAGCAGCCGTGGCATGTGGCAAA
LOC_Os03g09250
Os.10937.1.S1_at--371--5571Chr03:4804998..4805022 (25 bp)
GAAAGACGTGATTAGCTAGCTCTAA
LOC_Os03g09250
Os.10937.1.S1_at--182--5211Chr03:4804973..4804997 (25 bp)
GAATTGTTTTAGCTTCTCTTGTGAT
LOC_Os03g09250
Os.10937.1.S1_at--597--9591Chr03:4804957..4804981 (25 bp)
TCTTGTGATTTTTCGGTCTTTCCCA
LOC_Os03g09250
Os.10937.1.S1_at--315--3651NONE
CTTAACCTTCTGTGTCTTTGTGTGA
NONE
Os.10937.1.S1_at--998--7371Chr03:4804910..4804934 (25 bp)
GTGAGACTCTTATCGGGCTATGCAA
LOC_Os03g09250
Os.10937.1.S1_at--747--3711Chr03:4804885..4804909 (25 bp)
CTAGCAGCAGCCTTACTATGGTACT
LOC_Os03g09250
Target Sequence 
GTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCAGAGATCTTCATGGGGGGTAAGAGCACCA
TCGTTCTGCACAACACCTGTGAGGACTCACTCCTTGCCNGCGCCGATCATTCTTGATCTGGTGCTCCTTGCCGAGCTCAG
CACCAGGATTCAGCTGAAAGCCNGAGGGGGAGGAGAAGTTCCATTCCTTCCATCCAGTGGCTACCATCCTGAGCTACCTC
ACCAAGGCACCCCTTGTTCCTCCTGGCACACCAGTGGTGAACGCCCTGGCAAAGCAGAGGGCAATGCTTGAGAACATCAT
GAGGGCCTGCGTTGGGCTGGCCCCCGAGAACAACATGATCCTGGAGTACAAGTGAGGGAGGCTGCCGAGGCCGAGCAGCC
GTGGCATGTGGCAAAGAGGCGAATGGGATGGAGCAAGAAAGACGTGATTAGCTAGCTCTAAGAATTGTTTTAGCTTCTCT
TGTGATTTTTCGGTCTTTCCCATTCTTAACCTTCTGTGTCTTTGTGTGAGACTCTTATCGGGCTATGCAACTAGCAGCAG
CCTTACTATGGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis