Browse Element(s) Details


OsAffx.25026.1.S1_at

Description tigr:9631.m00871
TID=OsAffx.25026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0921010/11GRIM-19 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09180Os.52339.1.S1_at9/113+4765343..4768436PHP domain C-terminal region family protein, expressed
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein
LOC_Os03g09210Os.22368.1.S1_at11/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09210OsAffx.25026.1.S1_at10/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25026.1.S1_at--421--4511Chr03:4789495..4789516 (22 bp)
GCCGCCGCGAATTCCGTTGGTATGG
LOC_Os03g09210
OsAffx.25026.1.S1_at--945--5191Chr03:4789487..4789511 (25 bp)
GAATTCCGTTGGTATGGGACACCCG
LOC_Os03g09210
OsAffx.25026.1.S1_at--443--7631Chr03:4789472..4789496 (25 bp)
GGGACACCCGCCAAAAATCATGCCT
LOC_Os03g09210
OsAffx.25026.1.S1_at--534--2451Chr03:4789459..4789483 (25 bp)
AAAATCATGCCTTCCAGAGCTGCTT
LOC_Os03g09210
OsAffx.25026.1.S1_at--898--3631Chr03:4789449..4789473 (25 bp)
CTTCCAGAGCTGCTTCTTGTTATCT
LOC_Os03g09210
OsAffx.25026.1.S1_at--714--6791Chr03:4789431..4789455 (25 bp)
GTTATCTATATTCTACGCTACTTCG
LOC_Os03g09210
OsAffx.25026.1.S1_at--125--10571Chr03:4789421..4789445 (25 bp)
TTCTACGCTACTTCGAATGAATTGT
LOC_Os03g09210
OsAffx.25026.1.S1_at--904--2991Chr03:4789406..4789430 (25 bp)
AATGAATTGTTGCAGCCGGCGATTT
LOC_Os03g09210
OsAffx.25026.1.S1_at--973--9031Chr03:4789396..4789420 (25 bp)
TGCAGCCGGCGATTTGGTCTGAGAA
LOC_Os03g09210
OsAffx.25026.1.S1_at--52--8571Chr03:4789382..4789406 (25 bp)
TGGTCTGAGAAAAACCTTTTACACG
LOC_Os03g09210
OsAffx.25026.1.S1_at--925--10351NONE
TTTTACACGAAGTACGTGCACTCAA
NONE
Target Sequence 
GCCGCCGCGAATTCCGTTGGTATGGGACACCCGCCAAAAATCATGCCTTCCAGAGCTGCTTCTTGTTATCTATATTCTAC
GCTACTTCGAATGAATTGTTGCAGCCGGCGATTTGGTCTGAGAAAAACCTTTTACACGAAGTACGTGCACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis