Browse Element(s) Details


Os.52339.1.S1_at

Description gb:AK066502.1
DB_XREF= gi:32976520
TID=Os.52339.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074E12, full insert sequence.
FL= gb:AK066502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g091809/11PHP domain C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09130OsAffx.12928.1.S1_at11/113+4739728..4742218hypothetical protein
LOC_Os03g09140OsAffx.12797.1.S1_s_at10/113+4742874..4745483Ras-related protein Rab-6A, putative, expressed
LOC_Os03g09150Os.54842.1.S1_at11/113+4747685..4752191Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os03g09160OsAffx.12798.1.S1_at11/113+4754682..4755497expressed protein
LOC_Os03g09170OsAffx.12799.1.S1_s_at11/113+4759361..4760672AP2 domain containing protein, expressed
LOC_Os03g09180Os.52339.1.S1_at9/113+4765343..4768436PHP domain C-terminal region family protein, expressed
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein
LOC_Os03g09210Os.22368.1.S1_at11/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09210OsAffx.25026.1.S1_at10/113+4787046..4789938GRIM-19 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003677molecular_functionDNA binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52339.1.S1_at--346--6891Chr03:4766004..4766028 (25 bp)
GTATATCTGCATTAGCTCATCCATG
LOC_Os03g09180
Os.52339.1.S1_at--402--5451Chr03:4765970..4765994 (25 bp)
GAACCCAGATGCAGTCATCCGAGCA
LOC_Os03g09180
Os.52339.1.S1_at--1054--1031Chr03:4765940..4765964 (25 bp)
AGGTGCTGGCCTTAATGCTCTGGAA
LOC_Os03g09180
Os.52339.1.S1_at--399--1551Chr03:4765664..4765688 (25 bp)
AGCTTGCTATTACTACTTTGTGTTC
LOC_Os03g09180
Os.52339.1.S1_at--900--851Chr03:4765629..4765653 (25 bp)
ATGGCTCGGCCTATCTGGTGTAGTG
LOC_Os03g09180
Os.52339.1.S1_at--192--6851Chr03:4765582..4765606 (25 bp)
GTTTGCAGAGGAACCATCTACGACT
LOC_Os03g09180
Os.52339.1.S1_at--488--10251Chr03:4765508..4765532 (25 bp)
TTTCATCAACGGGTTCTGGTATGGA
LOC_Os03g09180
Os.52339.1.S1_at--96--9771NONE
TAATCTGTGCTTATCTTCCTGGTTA
NONE
Os.52339.1.S1_at--61--2711NONE
AAGCTTGCCCATTGCGTACGTAAAA
NONE
Os.52339.1.S1_at--1090--631Chr03:4765371..4765395 (25 bp)
ATGCATGACTACCTTGAACAATGGG
LOC_Os03g09180
Os.52339.1.S1_at--928--2971Chr03:4765352..4765376 (25 bp)
AATGGGTGTTCCCTTTATCTGGAAT
LOC_Os03g09180
Target Sequence 
GTATATCTGCATTAGCTCATCCATGGGCATTGAAGAACCCAGATGCAGTCATCCGAGCATTGAAAGGTGCTGGCCTTAAT
GCTCTGGAAGTCTACAGAAGTGACGGAAAAGTTGATGGATTTAGTGAATTAGCTGAGAAGTATGACCTTTTGAAGATCGG
AGGTTCAGATTTCCATGGAAGAGGTGGAAAGGATGAATCTGATATTGGAACAGTTAAGCTTGCTATTACTACTTTGTGTT
CCTTCTTGAAGATGGCTCGGCCTATCTGGTGTAGTGCCATGAAAGACATTCTACTGAAGTTTGCAGAGGAACCATCTACG
ACTAATCTGGGAAAGATGGTTTTGTTTGGAGAACTCATTAATTTTAATGGTTTTTCATCAACGGGTTCTGGTATGGATAT
TGTTAATCTGTGCTTATCTTCCTGGTTAAGTAACAATGGCATGGAAGAAGTGGAACTTGAGGAGGTAAGATTGAAGCTTG
CCCATTGCGTACGTAAAAGATAATCTCAAATGCATGACTACCTTGAACAATGGGTGTTCCCTTTATCTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis