Browse Element(s) Details


Os.22368.1.S1_at

Description gb:AK070573.1
DB_XREF= gi:32980597
TID=Os.22368.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056B01, full insert sequence.
FL= gb:AK070573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0921011/11GRIM-19 protein, expressed
LOC_Os08g061001/11Caffeic acid 3-O-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09180Os.52339.1.S1_at9/113+4765343..4768436PHP domain C-terminal region family protein, expressed
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein
LOC_Os03g09210Os.22368.1.S1_at11/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09210OsAffx.25026.1.S1_at10/113+4787046..4789938GRIM-19 protein, expressed
LOC_Os03g09220Os.7974.2.S1_at11/113+4794581..4799510Protein phosphatase 2C containing protein, expressed
LOC_Os03g09230Os.51190.1.S1_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09230OsAffx.25027.1.S1_s_at11/113+4799798..4801840Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g09250Os.10937.1.S1_at10/113+4804749..4808864Inositol-3-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22368.1.S1_at--416--10091Chr03:4787503..4787527 (25 bp)
TATGCTCTTTTGTGGACGGAACATC
LOC_Os03g09210
Os.22368.1.S1_at--94--491Chr03:4787481..4787505 (25 bp)
ATCTGTTTTGCCCTGATGTTCTCCC
LOC_Os03g09210
Os.22368.1.S1_at--362--731Chr03:4787466..4787490 (25 bp)
ATGTTCTCCCTTCTCTATGTTTTAT
LOC_Os03g09210
Os.22368.1.S1_at--369--2031Chr03:4787419..4787443 (25 bp)
ACTTCTTGGTCAGTGCTTTACCTTA
LOC_Os03g09210
Os.22368.1.S1_at--599--7811Chr03:4787412..4787436 (25 bp)
GGTCAGTGCTTTACCTTACTGTAAA
LOC_Os03g09210
Os.22368.1.S1_at--491--9211Chr03:4787384..4787408 (25 bp)
TCGAATGTATTCAGTCTTTTTAGAC
LOC_Os03g09210
Os.22368.1.S1_at--894--9812Chr08:3333051..3333098 (24 bp)
TAGACAAAGACACAGGAGGAACATT
LOC_Os08g06100
Os.22368.1.S1_at--2--9731Chr03:4787334..4787358 (25 bp)
TCAAGCGCTTGGATCGGATGGGTAT
LOC_Os03g09210
Os.22368.1.S1_at--676--2931Chr03:4787201..4787225 (25 bp)
AAGGCAACTCAAGAAGTCAGAATCA
LOC_Os03g09210
Os.22368.1.S1_at--439--5991Chr03:4787158..4787182 (25 bp)
GAGAGCCAAAGAGCCAAAACAGCGC
LOC_Os03g09210
Os.22368.1.S1_at--397--3111Chr03:4787086..4787110 (25 bp)
AATATGTATTCCATTCGTTTTATAA
LOC_Os03g09210
Target Sequence 
TATGCTCTTTTGTGGACGGAACATCTGTTTTGCCCTGATGTTCTCCCTTCTCTATGTTTTATTTTTTTCTACTCTGTNCT
AAGCACTTCTTGGTCAGTGCTTTACCTTACTGTAAACATTCGAATGTATTCAGTCTTTTTAGACAAAGACACAGGAGGAA
CATTCAATGTCAAGCGCTTGGATCGGATGGGTATATTACCGAGATAGTGAACGGAAAACTCAAGAAGTCAGAATCAAGCC
CGTGATCAGATAGGGAGAGCCAAAACAGTGTCNCTGCGTACTAGAGATAAATGAACAAGCAAAAGGCAACTCAAGAAGTC
AGAATCAAGCACGTGATCAGATAGAGAGAGCCAAAGAGCCAAAACAGCGCCNCTGCATGCGTACAGGAGATAAATGAACA
AGCAAAAGGCGNCCGATAATATGTATTCCATTCGTTTTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis