Browse Element(s) Details


OsAffx.12798.1.S1_at

Description tigr:9631.m00865
TID=OsAffx.12798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0916011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09130OsAffx.12928.1.S1_at11/113+4739728..4742218hypothetical protein
LOC_Os03g09140OsAffx.12797.1.S1_s_at10/113+4742874..4745483Ras-related protein Rab-6A, putative, expressed
LOC_Os03g09150Os.54842.1.S1_at11/113+4747685..4752191Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os03g09160OsAffx.12798.1.S1_at11/113+4754682..4755497expressed protein
LOC_Os03g09170OsAffx.12799.1.S1_s_at11/113+4759361..4760672AP2 domain containing protein, expressed
LOC_Os03g09180Os.52339.1.S1_at9/113+4765343..4768436PHP domain C-terminal region family protein, expressed
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed
LOC_Os03g09200OsAffx.25025.1.S1_at11/113+4771980..4777732expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12798.1.S1_at--229--5811Chr03:4755033..4755057 (25 bp)
GACGCGCCGAGCTTCGTCGTCGACA
LOC_Os03g09160
OsAffx.12798.1.S1_at--725--3991Chr03:4755065..4755089 (25 bp)
CGTGCACACCAACGCGTCGCGGCAG
LOC_Os03g09160
OsAffx.12798.1.S1_at--980--8251Chr03:4755085..4755109 (25 bp)
GGCAGCACCACGTGGCCTACGACTT
LOC_Os03g09160
OsAffx.12798.1.S1_at--440--3731Chr03:4755114..4755138 (25 bp)
CTCACGGCGATCAACCCGAACAAGG
LOC_Os03g09160
OsAffx.12798.1.S1_at--906--2891Chr03:4755135..4755159 (25 bp)
AAGGTGACCGCGCTGTGGTATGGCG
LOC_Os03g09160
OsAffx.12798.1.S1_at--637--5811Chr03:4755240..4755264 (25 bp)
GACGCCATGGGCTTCAACGTGCTGC
LOC_Os03g09160
OsAffx.12798.1.S1_at--314--4431Chr03:4755243..4755267 (25 bp)
GCCATGGGCTTCAACGTGCTGCTCC
LOC_Os03g09160
OsAffx.12798.1.S1_at--846--9091Chr03:4755262..4755286 (25 bp)
TGCTCCACGGGACGCAGCGCGACGG
LOC_Os03g09160
OsAffx.12798.1.S1_at--1086--951Chr03:4755402..4755426 (25 bp)
AGGACGCTGGCCGTGTCGTGCCACA
LOC_Os03g09160
OsAffx.12798.1.S1_at--449--1831Chr03:4755405..4755429 (25 bp)
ACGCTGGCCGTGTCGTGCCACATCA
LOC_Os03g09160
OsAffx.12798.1.S1_at--416--6191Chr03:4755443..4755467 (25 bp)
GAGGAAAGACGTGCACATCTCCTCG
LOC_Os03g09160
Target Sequence 
GACGCGCCGAGCTTCGTCGTCGACAACCTCTCCGTGCACACCAACGCGTCGCGGCAGCACCACGTGGCCTACGACTTCTT
CCTCACGGCGATCAACCCGAACAAGGTGACCGCGCTGTGGTATGGCGGCCGCGGCACGGCGAGGCTGGCGCACAAGGGCA
ACGCCCTGGCGAAGGGCGGCGTCGGGGAGCCCGAGGACGGCGGGGAGGACGCCATGGGCTTCAACGTGCTGCTCCACGGG
ACGCAGCGCGACGGCCGCACGCCCAGGGCGGTGGAGAAGGCGCTCCGCGGCTCCAAGGGCGCCGTGACGCTCGACCTCGC
CGTCGAGTTCGCCGTGCAGGTGCACGCCGGCGCGCTCGGCTTCGAGCGGAGGACGCTGGCCGTGTCGTGCCACATCACCG
CCGCCGGGCTGAGGAAAGACGTGCACATCTCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis