Browse Element(s) Details


OsAffx.25028.1.S1_at

Description tigr:9631.m00882
TID=OsAffx.25028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transcription factor TFIIB repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0982011/11Transcription factor TFIIB repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09310Os.6725.1.S1_at11/113+4841301..4845851expressed protein
LOC_Os03g09810NANA3+4855628..4859260Polyamine oxidase precursor, putative
LOC_Os03g09820OsAffx.25028.1.S1_at11/113+4865505..4866431Transcription factor TFIIB repeat family protein
LOC_Os03g09830OsAffx.3177.1.S1_at11/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_x_at1/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_at1/113+4868609..4871374expressed protein
LOC_Os03g09840Os.15761.1.S1_at11/113+4873640..4876148C2 domain-containing protein, putative, expressed
LOC_Os03g09850OsAffx.3178.1.S1_at11/113+4881472..4882725auxin-responsive protein, putative, expressed
LOC_Os03g09860Os.18202.1.S1_at11/113+4885363..4887908acetyltransferase, GNAT family protein, expressed
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25028.1.S1_at--395--1591Chr03:4865884..4865908 (25 bp)
AGCTCGTGGCCACCATCAGAGACCG
LOC_Os03g09820
OsAffx.25028.1.S1_at--490--3371Chr03:4865894..4865918 (25 bp)
CACCATCAGAGACCGGGCCAAGGAG
LOC_Os03g09820
OsAffx.25028.1.S1_at--592--5411Chr03:4865942..4865966 (25 bp)
GAAGCTGTGCGCCAGGGTGCGGAAC
LOC_Os03g09820
OsAffx.25028.1.S1_at--1045--5151Chr03:4866007..4866031 (25 bp)
GCAACGAGGGCAACCCGCGGACGCT
LOC_Os03g09820
OsAffx.25028.1.S1_at--1100--7371Chr03:4866048..4866072 (25 bp)
GTGATGCGCGATTGCCAGGACAAGA
LOC_Os03g09820
OsAffx.25028.1.S1_at--740--4631Chr03:4866055..4866079 (25 bp)
GCGATTGCCAGGACAAGAAGGAGAT
LOC_Os03g09820
OsAffx.25028.1.S1_at--897--8431Chr03:4866131..4866155 (25 bp)
GGCCATGGAGATGGGCGTCGTGCGC
LOC_Os03g09820
OsAffx.25028.1.S1_at--308--4511Chr03:4866159..4866183 (25 bp)
GCCGACTACATGAGCCGCTTCGGCT
LOC_Os03g09820
OsAffx.25028.1.S1_at--650--9871Chr03:4866165..4866189 (25 bp)
TACATGAGCCGCTTCGGCTCGCGGC
LOC_Os03g09820
OsAffx.25028.1.S1_at--372--4511Chr03:4866363..4866387 (25 bp)
GCCGAGGCAACCATCAAGGAGGCCT
LOC_Os03g09820
OsAffx.25028.1.S1_at--568--8231Chr03:4866368..4866392 (25 bp)
GGCAACCATCAAGGAGGCCTGCAAG
LOC_Os03g09820
Target Sequence 
AGCTCGTGGCCACCATCAGAGACCGGGCCAAGGAGCTGTTCAAGAAGATGGAGGAGGCGAAGCTGTGCGCCAGGGTGCGG
AACCGCGACGCCGCGTACGCGGCCTGCCTCCACATCGCGTGCCGCAACGAGGGCAACCCGCGGACGCTGAAGGAGCTCGC
CTCGGTGATGCGCGATTGCCAGGACAAGAAGGAGATCGGGAGGATGGAGAGGATCATCAGGAGGCACCTCGGGGAGGAGG
CCGGGACGGCCATGGAGATGGGCGTCGTGCGCGCCGCCGACTACATGAGCCGCTTCGGCTCGCGGCTCGGGATGGGCAAG
CCGGAGGTGCGGGAGGCGCAGAGGGCGGCGCAGACGCTGGAGGACAAGCTCGACGTGCGGCGCAACCCGGAGTCCATCGC
CGCTGCGATCATCTACATGGTGGTGCAGCGCGCCGGCGCCCAGACGTCCGCGCGCGACGTGTCCAAGGCCTCCGGCGTCG
CCGAGGCAACCATCAAGGAGGCCTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis