Browse Element(s) Details


OsAffx.3179.1.S1_s_at

Description tigr:9631.m00889
TID=OsAffx.3179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitochondrial import inner membrane translocase subunit Tim17, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0987011/11mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09820OsAffx.25028.1.S1_at11/113+4865505..4866431Transcription factor TFIIB repeat family protein
LOC_Os03g09830OsAffx.3177.1.S1_at11/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_x_at1/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_at1/113+4868609..4871374expressed protein
LOC_Os03g09840Os.15761.1.S1_at11/113+4873640..4876148C2 domain-containing protein, putative, expressed
LOC_Os03g09850OsAffx.3178.1.S1_at11/113+4881472..4882725auxin-responsive protein, putative, expressed
LOC_Os03g09860Os.18202.1.S1_at11/113+4885363..4887908acetyltransferase, GNAT family protein, expressed
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g09880Os.49607.1.S1_at11/113+4892431..4893180membrane protein, putative, expressed
LOC_Os03g09900Os.20151.1.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900Os.20151.2.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900OsAffx.30514.2.S1_s_at1/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09910Os.49776.1.S1_at11/113+4915589..4920154Aspartate aminotransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3179.1.S1_s_at--798--8331Chr03:4891028..4891052 (25 bp)
GGCTGCAATGGCACAGACACTTGGT
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--985--9071Chr03:4891058..4891082 (25 bp)
TGCTTTGACCGTTTCACACCAGAAT
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--877--6331Chr03:4891131..4891155 (25 bp)
GATGCTTTATCTTCATGCTGCCAGC
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--375--631Chr03:4891145..4891169 (25 bp)
ATGCTGCCAGCCCTTAGTACTAAAG
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--1075--1491Chr03:4891174..4891198 (25 bp)
AGCACTAGACTCTTCAGCATAGGGA
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--1025--1251Chr03:4891261..4891285 (25 bp)
AGATTTGCTTTCTGTATGACGCCAG
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--422--691Chr03:4891276..4891300 (25 bp)
ATGACGCCAGGTTTTTCTTGCTGCA
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--149--2671Chr03:4891308..4891332 (25 bp)
AAGCGCTGGCTTAACTAGATTTCAT
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--727--5531Chr03:4891355..4891379 (25 bp)
GAAAAATTCGTCTCTGTGGCACCTG
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--1091--8651Chr03:4891369..4891393 (25 bp)
TGTGGCACCTGTTCTGTAATCTTTC
LOC_Os03g09870
OsAffx.3179.1.S1_s_at--8--8751Chr03:4891383..4891407 (25 bp)
TGTAATCTTTCCATCTTGCTATCCA
LOC_Os03g09870
Target Sequence 
GGCTGCAATGGCACAGACACTTGGTGGGAGTGCTTTGACCGTTTCACACCAGAATGGTGGCGTTCTCCCACCATTCACTC
TGCCACCACTTCTTGATGCATCAGATGCTTTATCTTCATGCTGCCAGCCCTTAGTACTAAAGCCGAAGCACTAGACTCTT
CAGCATAGGGAGAAGGAGATGCTCAAGAAAGCTATAGCTTAGTGAATTTTGTTTTGGGACATGTCTCATATCTAGATTTG
CTTTCTGTATGACGCCAGGTTTTTCTTGCTGCACTGTGGCAAGCGCTGGCTTAACTAGATTTCATTGGTTTGGCAGATAA
AATTTAAGAAAAATTCGTCTCTGTGGCACCTGTTCTGTAATCTTTCCATCTTGCTATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3179.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis