Browse Element(s) Details


Os.20151.1.S1_at

Description gb:AK070149.1
DB_XREF= gi:32980173
TID=Os.20151.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.20151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042P18, full insert sequence.
FL= gb:AK104413.1 gb:AK070149.1 gb:AK104041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0990011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09850OsAffx.3178.1.S1_at11/113+4881472..4882725auxin-responsive protein, putative, expressed
LOC_Os03g09860Os.18202.1.S1_at11/113+4885363..4887908acetyltransferase, GNAT family protein, expressed
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g09880Os.49607.1.S1_at11/113+4892431..4893180membrane protein, putative, expressed
LOC_Os03g09900Os.20151.1.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900Os.20151.2.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900OsAffx.30514.2.S1_s_at1/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09910Os.49776.1.S1_at11/113+4915589..4920154Aspartate aminotransferase, putative, expressed
LOC_Os03g09920Os.6164.1.S1_at10/113+4920519..4924675Possible metal-binding domain in RNase L inhibitor, RLI family protein, expressed
LOC_Os03g09930Os.18597.1.S1_at11/113+4925440..4930058Sulfate transporter 2.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20151.1.S1_at--1056--4131Chr03:4904638..4904662 (25 bp)
CGCTGCTGCTGAGGCCCGACAAGAA
LOC_Os03g09900
Os.20151.1.S1_at--882--8191Chr03:4904779..4904803 (25 bp)
GGAAGAGGAGCTACATTGCCATCCT
LOC_Os03g09900
Os.20151.1.S1_at--4--9391Chr03:4904833..4904857 (25 bp)
TCGAGGCCATCACCTGGGTCATCGT
LOC_Os03g09900
Os.20151.1.S1_at--104--7571Chr03:4904916..4904940 (25 bp)
GGGCGCGCGTAGTTTGATCAGCATC
LOC_Os03g09900
Os.20151.1.S1_at--1072--471Chr03:4904938..4904962 (25 bp)
ATCTGATCGACGTGTGCCTTGCGCT
LOC_Os03g09900
Os.20151.1.S1_at--651--9931Chr03:4904969..4904993 (25 bp)
TACGGGTGTGTAGTTTTGCTGCGAT
LOC_Os03g09900
Os.20151.1.S1_at--433--3831Chr03:4904987..4905011 (25 bp)
CTGCGATGTGTGTGTGTATTTGTCT
LOC_Os03g09900
Os.20151.1.S1_at--313--6891Chr03:4905002..4905026 (25 bp)
GTATTTGTCTTCTGCTAGCTGTGTA
LOC_Os03g09900
Os.20151.1.S1_at--841--4851Chr03:4905015..4905039 (25 bp)
GCTAGCTGTGTATCTTCCATTTTTT
LOC_Os03g09900
Os.20151.1.S1_at--801--6771Chr03:4905040..4905064 (25 bp)
GTTACTGCTTCTGTAGACTACGTAG
LOC_Os03g09900
Os.20151.1.S1_at--857--9871Chr03:4905099..4905123 (25 bp)
TACATTTTCAGGTCTCACGATGACA
LOC_Os03g09900
Target Sequence 
CGCTGCTGCTGAGGCCCGACAAGAAGAACAAGTACAGGTTCTACTGGAACATCTACCACCACTCCGTCGGCTACTCCGCC
ATCGTCCTCGCCGCCGTCAACATCTTCAAGGGCCTCGACATCCTCAAGCCGGCCAGCGGCTGGAAGAGGAGCTACATTGC
CATCCTCGCCACGCTCGCCGGCGTCGCGCTCCTGCTCGAGGCCATCACCTGGGTCATCGTCCTCCGGCGGAAGAAGAGCG
ACAAGTCGTCGTCGCCGTACGGCGCCACCAACGGCAACGGGCGCGCGTAGTTTGATCAGCATCTGATCGACGTGTGCCTT
GCGCTACGGCCTACGGGTGTGTAGTTTTGCTGCGATGTGTGTGTGTATTTGTCTTCTGCTAGCTGTGTATCTTCCATTTT
TTGTTACTGCTTCTGTAGACTACGTAGAGGTTCAGAGATTATTTCTTTTCCTTTTTTTTNNNTTTACATTTTCAGGTCTC
ACGATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis