Browse Element(s) Details


Os.18597.1.S1_at

Description gb:AK067353.1
DB_XREF= gi:32977371
TID=Os.18597.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100L12, full insert sequence.
FL= gb:AK067353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0993011/11Sulfate transporter 2.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09900Os.20151.1.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900Os.20151.2.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900OsAffx.30514.2.S1_s_at1/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09910Os.49776.1.S1_at11/113+4915589..4920154Aspartate aminotransferase, putative, expressed
LOC_Os03g09920Os.6164.1.S1_at10/113+4920519..4924675Possible metal-binding domain in RNase L inhibitor, RLI family protein, expressed
LOC_Os03g09930Os.18597.1.S1_at11/113+4925440..4930058Sulfate transporter 2.1, putative, expressed
LOC_Os03g09940Os.57371.1.S1_at11/113+4936619..4938565Sulfate transporter 2.1, putative, expressed
LOC_Os03g09950NANA3+4946364..4946609retrotransposon protein, putative, unclassified
LOC_Os03g09960NANA3+4949508..4950131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18597.1.S1_at--482--831Chr03:4926171..4926195 (25 bp)
ATGGATACTTCAGGTCTTGTGGCGC
LOC_Os03g09930
Os.18597.1.S1_at--271--1471Chr03:4925902..4925926 (25 bp)
AGAAGGATGGTTCTTCCTCACGGTG
LOC_Os03g09930
Os.18597.1.S1_at--42--2671Chr03:4925873..4925897 (25 bp)
AAGCCGTGGAAGCTTGCCTGGCAAA
LOC_Os03g09930
Os.18597.1.S1_at--372--5551Chr03:4925840..4925864 (25 bp)
GAAACGCCCTGGAATGCTGCTGAAT
LOC_Os03g09930
Os.18597.1.S1_at--12--5271Chr03:4925819..4925843 (25 bp)
GAATCGAATCCACCGTGTGCATGGT
LOC_Os03g09930
Os.18597.1.S1_at--818--811Chr03:4925799..4925823 (25 bp)
ATGGTCTCTCCGGTGGTTGAATAAA
LOC_Os03g09930
Os.18597.1.S1_at--523--5631Chr03:4925770..4925794 (25 bp)
GACACTAGTGCTTCGTGGTACGCTA
LOC_Os03g09930
Os.18597.1.S1_at--27--7331Chr03:4925687..4925711 (25 bp)
GTGCTTCATGGATTGTGCGACGTGC
LOC_Os03g09930
Os.18597.1.S1_at--574--1851Chr03:4925647..4925671 (25 bp)
ACGAACTGTGTCTGTCTGAACTTAG
LOC_Os03g09930
Os.18597.1.S1_at--459--531Chr03:4925621..4925645 (25 bp)
ATGCCGAGTTCGTCTAAATTCCCCA
LOC_Os03g09930
Os.18597.1.S1_at--42--3151Chr03:4925605..4925629 (25 bp)
AATTCCCCACTATAGCTGTAGGTTT
LOC_Os03g09930
Target Sequence 
ATGGATACTTCAGGTCTTGTGGCGCTGGAAGAACTGCACAAGGAGCTGGCGTGTCTCGGCATCCAGATGGCTATAGCCAA
GCCTGGATGGCAGGTGATCCACAAGATGAAACTGGCACGGCTCGTCGACGGAATCGGAGAAGGATGGTTCTTCCTCACGG
TGGGCGAAGCCGTGGAAGCTTGCCTGGCAAACAAGGCGGGAAACGCCCTGGAATGCTGCTGAATCGAATCCACCGTGTGC
ATGGTCTCTCCGGTGGTTGAATAAAGAGAGACACTAGTGCTTCGTGGTACGCTACAAAAGGATTGTGTTGTGTGCTAGTG
CTGCACGATGATGCAGCTTCAGCTGTAGTGTGGTGCTTCATGGATTGTGCGACGTGCAACTGTTGGGGGAAGACGAACTG
TGTCTGTCTGAACTTAGTATGCCGAGTTCGTCTAAATTCCCCACTATAGCTGTAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis