Browse Element(s) Details


OsAffx.30514.2.S1_s_at

Description tigr:9638.m01975
TID=OsAffx.30514.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=related to microbial divalent cation tolerance proteins, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2320410/11Protein CutA, chloroplast precursor, putative, expressed
LOC_Os03g099001/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23150OsAffx.20427.1.S1_at11/1110+11750672..11753497retrotransposon protein, putative, unclassified
LOC_Os10g23160NANA10+11754855..11756111ent-kaurenoic acid oxidase, putative
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed
LOC_Os10g23190OsAffx.29313.1.S1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190OsAffx.22896.1.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.46314.2.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.10731.2.A1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23204Os.9220.1.S1_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30513.1.S1_s_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30514.2.S1_s_at10/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204Os.56258.1.S1_at2/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28551.1.S1_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28418.2.S1_x_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23220Os.27757.1.A1_s_at11/1110+11782050..11784935expressed protein
LOC_Os10g23220Os.27757.1.A1_at11/1110+11782050..11784935expressed protein
LOC_Os10g23230OsAffx.18359.1.S1_at11/1110+11788254..11788841hypothetical protein
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30514.2.S1_s_at--210--4751Chr10:11780953..11780977 (25 bp)
GCTGAAGAACTGCTCATCATAAAGA
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--506--5471Chr10:11780959..11780983 (25 bp)
GAACTGCTCATCATAAAGACAAGGG
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--51--2891Chr10:11780979..11781003 (25 bp)
AAGGGAGTCTCTTCTTGATGCGTTG
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--409--7151Chr10:11780985..11781009 (25 bp)
GTCTCTTCTTGATGCGTTGACCGAA
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--312--3611Chr10:11780992..11781016 (25 bp)
CTTGATGCGTTGACCGAACACGTGA
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--184--8911Chr10:11781002..11781026 (25 bp)
TGACCGAACACGTGAAAGCCAACCA
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--333--2651Chr10:11781017..11781159 (25 bp)
AAGCCAACCATGAGTATGACGTTCC
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--266--1731NONE
ACCATGAGTATGACGTTCCTGAAGT
NONE
OsAffx.30514.2.S1_s_at--139--8951Chr10:11781154..11781175 (22 bp)
TGACGTTCCTGAAGTCATCGCGCTG
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--352--6692Chr10:11781155..11781179 (25 bp)
GTTCCTGAAGTCATCGCGCTGCCCA
LOC_Os10g23204
OsAffx.30514.2.S1_s_at--29--4571Chr10:11781170..11781194 (25 bp)
GCGCTGCCCATAAAAGGAGGCAACC
LOC_Os10g23204
Target Sequence 
GCTGAAGAACTGCTCATCATAAAGACAAGGGAGTCTCTTCTTGATGCGTTGACCGAACACGTGAAAGCCAACCATGAGTA
TGACGTTCCTGAAGTCATCGCGCTGCCCATAAAAGGAGGCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30514.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis