Browse Element(s) Details


Os.9220.1.S1_at

Description gb:AK059907.1
DB_XREF= gi:32969925
TID=Os.9220.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033110P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H09, full insert sequence.
FL= gb:AK119895.1 gb:AK059907.1 gb:AK102858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2320411/11Protein CutA, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23150OsAffx.20427.1.S1_at11/1110+11750672..11753497retrotransposon protein, putative, unclassified
LOC_Os10g23160NANA10+11754855..11756111ent-kaurenoic acid oxidase, putative
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed
LOC_Os10g23190OsAffx.29313.1.S1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190OsAffx.22896.1.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.46314.2.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.10731.2.A1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23204Os.9220.1.S1_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30513.1.S1_s_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30514.2.S1_s_at10/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204Os.56258.1.S1_at2/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28551.1.S1_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28418.2.S1_x_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23220Os.27757.1.A1_s_at11/1110+11782050..11784935expressed protein
LOC_Os10g23220Os.27757.1.A1_at11/1110+11782050..11784935expressed protein
LOC_Os10g23230OsAffx.18359.1.S1_at11/1110+11788254..11788841hypothetical protein
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9220.1.S1_at--1088--5551Chr10:11781230..11781254 (25 bp)
GAAAGCTAACTCTGTGCCGTGGCAT
LOC_Os10g23204
Os.9220.1.S1_at--772--7531Chr10:11781248..11781272 (25 bp)
GTGGCATGCTTTTTCACTACATTTC
LOC_Os10g23204
Os.9220.1.S1_at--818--8831Chr10:11781284..11781308 (25 bp)
TGATACGTATACTCTGCATCTCCAT
LOC_Os10g23204
Os.9220.1.S1_at--646--4971Chr10:11781299..11781323 (25 bp)
GCATCTCCATGGCTTCGGTGTGAAG
LOC_Os10g23204
Os.9220.1.S1_at--382--7931Chr10:11781330..11781354 (25 bp)
GGATTTTCCTATCTTTTACAGCTTA
LOC_Os10g23204
Os.9220.1.S1_at--878--651Chr10:11781400..11781424 (25 bp)
ATGAAACCCTCTCGTGTTTGTGGAG
LOC_Os10g23204
Os.9220.1.S1_at--871--5251Chr10:11781472..11781496 (25 bp)
GAATCTGTCATCTGTGTTATCACCT
LOC_Os10g23204
Os.9220.1.S1_at--539--3551Chr10:11781512..11781536 (25 bp)
CATCTTGAATGGTGGCTTGGCGTGA
LOC_Os10g23204
Os.9220.1.S1_at--675--10251Chr10:11781543..11781567 (25 bp)
TTTCGCTGTGAGTGCCCCAGTTAAA
LOC_Os10g23204
Os.9220.1.S1_at--39--5271Chr10:11781571..11781595 (25 bp)
GAATGCTTCTGGTCTGGTTGCACCG
LOC_Os10g23204
Os.9220.1.S1_at--106--671Chr10:11781602..11781626 (25 bp)
ATGCAATCAGGTCTTGTCTTCCTAC
LOC_Os10g23204
Target Sequence 
GAAAGCTAACTCTGTGCCGTGGCATGCTTTTTCACTACATTTCGAAGCGTCTGGTGATACGTATACTCTGCATCTCCATG
GCTTCGGTGTGAAGTGTGATGGATTTTCCTATCTTTTACAGCTTATGTCAAATAAACTGTAGTAGCGTGCGTGCATGGCA
GATGTTGTACATGAAACCCTCTCGTGTTTGTGGAGTTAGACGACATTTCGTTTCTATTTGATTTTTTTTTGGGTGAAGTC
ATGAATCTGTCATCTGTGTTATCACCTTTCCCATGTCAAACCCATCTTGAATGGTGGCTTGGCGTGAGGTTGGTTTCGCT
GTGAGTGCCCCAGTTAAAAGTGAATGCTTCTGGTCTGGTTGCACCGTAGCATATGCAATCAGGTCTTGTCTTCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis