Browse Element(s) Details


Os.27757.1.A1_s_at

Description gb:AK059720.1
DB_XREF= gi:32969738
TID=Os.27757.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-032-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-H03, full insert sequence.
FL= gb:AK059720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2322011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23180Os.18932.1.S1_at11/1110+11758871..11767257Cytochrome P450 family protein, expressed
LOC_Os10g23190OsAffx.29313.1.S1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190OsAffx.22896.1.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.46314.2.S1_x_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23190Os.10731.2.A1_at1/1110+11769778..11775651transposon protein, putative, Mutator sub-class
LOC_Os10g23204Os.9220.1.S1_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30513.1.S1_s_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30514.2.S1_s_at10/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204Os.56258.1.S1_at2/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28551.1.S1_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28418.2.S1_x_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23220Os.27757.1.A1_s_at11/1110+11782050..11784935expressed protein
LOC_Os10g23220Os.27757.1.A1_at11/1110+11782050..11784935expressed protein
LOC_Os10g23230OsAffx.18359.1.S1_at11/1110+11788254..11788841hypothetical protein
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27757.1.A1_s_at--438--2851Chr10:11782543..11782567 (25 bp)
AAGTCTGCTGATTGAAGCTGATGCA
LOC_Os10g23220
Os.27757.1.A1_s_at--136--2951Chr10:11782502..11782526 (25 bp)
AAGGCTACTTTGCATCTTGCCTGAT
LOC_Os10g23220
Os.27757.1.A1_s_at--1045--9571Chr10:11782488..11782512 (25 bp)
TCTTGCCTGATCAACCAATCACATT
LOC_Os10g23220
Os.27757.1.A1_s_at--127--9791Chr10:11782449..11782473 (25 bp)
TAAGGGTCTTGTGTGTGATGCTGCT
LOC_Os10g23220
Os.27757.1.A1_s_at--486--7391Chr10:11782435..11782459 (25 bp)
GTGATGCTGCTGTCATCTCTGAAAG
LOC_Os10g23220
Os.27757.1.A1_s_at--142--2451Chr10:11782370..11782394 (25 bp)
AAAATTTCGAGTGCCATGCTGTTTG
LOC_Os10g23220
Os.27757.1.A1_s_at--705--791Chr10:11782281..11782305 (25 bp)
ATGTGTGTTTTGACTGGCATCCTAG
LOC_Os10g23220
Os.27757.1.A1_s_at--473--8211Chr10:11782266..11782290 (25 bp)
GGCATCCTAGGCGTGTAAACTTCCT
LOC_Os10g23220
Os.27757.1.A1_s_at--567--9831Chr10:11782251..11782275 (25 bp)
TAAACTTCCTATGATGCTCCTTTGC
LOC_Os10g23220
Os.27757.1.A1_s_at--711--8731Chr10:11782220..11782244 (25 bp)
TGTAATTCACGGCTATTCACCAGAA
LOC_Os10g23220
Os.27757.1.A1_s_at--36--5551Chr10:11782181..11782205 (25 bp)
GAAACTAGTGTGTCCATGCTTTGCA
LOC_Os10g23220
Target Sequence 
AAGTCTGCTGATTGAAGCTGATGCAGTTACTCGAGAAGATCAAGGCTACTTTGCATCTTGCCTGATCAACCAATCACATT
AGTACAAGGACGATTAAGGGTCTTGTGTGTGATGCTGCTGTCATCTCTGAAAGATGCTATAGTCAGAGTGTCGGTGAAAA
ATATTGTCTTTTTAAAATTTCGAGTGCCATGCTGTTTGTATGTTTCTTCAGATAGATTTCTTCTGTAATGTAACTGTCAA
ATGTTTGTCTATATATATGTTTATGTGTGTTTTGACTGGCATCCTAGGCGTGTAAACTTCCTATGATGCTCCTTTGCAAA
ATTTGTAATTCACGGCTATTCACCAGAATGTAGTATGCTCTGGAAACTAGTGTGTCCATGCTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27757.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis