Browse Element(s) Details


OsAffx.18360.1.S1_at

Description tigr:9638.m01979
TID=OsAffx.18360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2325011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23204Os.9220.1.S1_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30513.1.S1_s_at11/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.30514.2.S1_s_at10/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204Os.56258.1.S1_at2/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28551.1.S1_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23204OsAffx.28418.2.S1_x_at1/1110+11776399..11781626Protein CutA, chloroplast precursor, putative, expressed
LOC_Os10g23220Os.27757.1.A1_s_at11/1110+11782050..11784935expressed protein
LOC_Os10g23220Os.27757.1.A1_at11/1110+11782050..11784935expressed protein
LOC_Os10g23230OsAffx.18359.1.S1_at11/1110+11788254..11788841hypothetical protein
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein
LOC_Os10g23260OsAffx.18361.1.S1_at11/1110+11812688..11813821hypothetical protein
LOC_Os10g23270OsAffx.30515.5.S1_x_at11/1110+11815379..11816885hypothetical protein
LOC_Os10g23270OsAffx.30515.5.S1_at11/1110+11815379..11816885hypothetical protein
LOC_Os10g23280OsAffx.30516.1.S1_at11/1110+11818655..11819604hypothetical protein
LOC_Os10g23280OsAffx.19669.1.S1_at1/1110+11818655..11819604hypothetical protein
LOC_Os10g23290Os.47463.1.S1_x_at6/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23290Os.14491.2.S1_x_at5/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18360.1.S1_at--693--1071Chr10:11802762..11802786 (25 bp)
AGGGAACACTGGGTTGCTCACTGTT
LOC_Os10g23250
OsAffx.18360.1.S1_at--229--9591Chr10:11802824..11802848 (25 bp)
TCTTGACAGCAATGTGCGTGGCTTT
LOC_Os10g23250
OsAffx.18360.1.S1_at--317--4671Chr10:11802839..11802863 (25 bp)
GCGTGGCTTTCAACTCGAAAACGGT
LOC_Os10g23250
OsAffx.18360.1.S1_at--889--831Chr10:11802892..11802916 (25 bp)
ATGGAGATCCTAGCTATCAGACAGA
LOC_Os10g23250
OsAffx.18360.1.S1_at--482--7591Chr10:11803331..11803355 (25 bp)
GGGCTAGTGGCTGCGTATGCTCCAA
LOC_Os10g23250
OsAffx.18360.1.S1_at--166--6911Chr10:11803345..11803369 (25 bp)
GTATGCTCCAACTTTGCTAGTCGAT
LOC_Os10g23250
OsAffx.18360.1.S1_at--67--9371Chr10:11803365..11803389 (25 bp)
TCGATGCAACTCAGGACTTGGTGTC
LOC_Os10g23250
OsAffx.18360.1.S1_at--614--8611Chr10:11803383..11803407 (25 bp)
TGGTGTCCTCGTCAATTAGCACAAG
LOC_Os10g23250
OsAffx.18360.1.S1_at--737--9171Chr10:11803537..11803561 (25 bp)
TGCCGCACATACCATCATTGCTAAA
LOC_Os10g23250
OsAffx.18360.1.S1_at--283--8193Chr10:11803587..11803611 (25 bp)
GGAAGCATCCCTCTCAAGAAGTTAG
LOC_Os10g23250
OsAffx.18360.1.S1_at--944--1451Chr10:11803603..11803627 (25 bp)
AGAAGTTAGACAACGCTCTCGTCAA
LOC_Os10g23250
Target Sequence 
AGGGAACACTGGGTTGCTCACTGTTGTTGATGATACCGCAATAGAGCAGCAAACTAAGGAGGTCTTGACAGCAATGTGCG
TGGCTTTCAACTCGAAAACGGTGATGAACAGGGCTCCAGAAAAAATCTCAATGGAGATCCTAGCTATCAGACAGAACATG
GTGACCTTGGCTGCAAATGAAGAGAGGGAGTATTGTCATAGACAATGCAGCTCAGGAGATGGAGTCGGACAAGGTGGGCT
AGTGGCTGCGTATGCTCCAACTTTGCTAGTCGATGCAACTCAGGACTTGGTGTCCTCGTCAATTAGCACAAGAGATGCTG
CTCCAATGGTGAATCAGGAGGAGACAGAGGTAACCACATCACAGGACTCGATGATCTTTGATGTCAGGATTGCAGGTGTC
AACACGGTAATTGAGTTGGCTGCTGATGGGGCACAACTTGATGCCGCACATACCATCATTGCTAAAGCAAAGGTGCAAGT
AGAAGCAGGTGGGAAGCATCCCTCTCAAGAAGTTAGACAACGCTCTCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis