Browse Element(s) Details


OsAffx.18361.1.S1_at

Description tigr:9638.m01980
TID=OsAffx.18361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2326011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23230OsAffx.18359.1.S1_at11/1110+11788254..11788841hypothetical protein
LOC_Os10g23240Os.32823.1.S1_x_at2/1110+11791407..11791689hypothetical protein
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein
LOC_Os10g23260OsAffx.18361.1.S1_at11/1110+11812688..11813821hypothetical protein
LOC_Os10g23270OsAffx.30515.5.S1_x_at11/1110+11815379..11816885hypothetical protein
LOC_Os10g23270OsAffx.30515.5.S1_at11/1110+11815379..11816885hypothetical protein
LOC_Os10g23280OsAffx.30516.1.S1_at11/1110+11818655..11819604hypothetical protein
LOC_Os10g23280OsAffx.19669.1.S1_at1/1110+11818655..11819604hypothetical protein
LOC_Os10g23290Os.47463.1.S1_x_at6/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23290Os.14491.2.S1_x_at5/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18361.1.S1_at--820--7991Chr10:11812872..11812896 (25 bp)
GGATGTACTCAGACAATAGCTTCAG
LOC_Os10g23260
OsAffx.18361.1.S1_at--598--291Chr10:11812887..11812911 (25 bp)
ATAGCTTCAGCTTAGAAACCCGGAT
LOC_Os10g23260
OsAffx.18361.1.S1_at--853--2371Chr10:11812902..11812926 (25 bp)
AAACCCGGATTGTTGCTCGCAATTC
LOC_Os10g23260
OsAffx.18361.1.S1_at--590--3151Chr10:11812922..11812946 (25 bp)
AATTCTCGTGCGCAGTGGTATTCAT
LOC_Os10g23260
OsAffx.18361.1.S1_at--69--7811Chr10:11813002..11813026 (25 bp)
GGTCGAGAAGTGTCCTCATGAATAT
LOC_Os10g23260
OsAffx.18361.1.S1_at--284--731Chr10:11813270..11813292 (23 bp)
ATGTTGAACCAACCAGTGTCGCACT
LOC_Os10g23260
OsAffx.18361.1.S1_at--433--5111Chr10:11813288..11813312 (25 bp)
GCACTCAATCATTCTGCTGAACCAA
LOC_Os10g23260
OsAffx.18361.1.S1_at--295--4751Chr10:11813303..11813327 (25 bp)
GCTGAACCAACCAATGCCGCAAAGA
LOC_Os10g23260
OsAffx.18361.1.S1_at--542--3051Chr10:11813331..11813355 (25 bp)
AATCTGTTGAACTTGAATACCTTGG
LOC_Os10g23260
OsAffx.18361.1.S1_at--15--5311Chr10:11813614..11813638 (25 bp)
GAAGGACCCTCCTATGTCAGTAGGA
LOC_Os10g23260
OsAffx.18361.1.S1_at--481--711Chr10:11813763..11813787 (25 bp)
ATGATGGCTGCCTGCGGAGACTTCA
LOC_Os10g23260
Target Sequence 
GGATGTACTCAGACAATAGCTTCAGCTTAGAAACCCGGATTGTTGCTCGCAATTCTCGTGCGCAGTGGTATTCATTGAAC
CAAGTGGTGGATGCAGACCACACTCAATTTAGTGGACTGCTTGATGATTTGGTCGAGAAGTGTCCTCATGAATATGTTGA
ACCAACCAGTGTCGCACTCAATCATTCTGCTGAACCAACCAATGCCGCAAAGAGTCAATCTGTTGAACTTGAATACCTTG
GTAACCCAAATCCAATGAATGAGCATGTGGGTGTTGATGATGAAGTAGAAGACATTGATGATGAAATTAAAGACAGGGAG
CCAGAAAATATGCTTGATGCTTTTTATGATAAGAAGGACCCTCCTATGTCAGTAGGAACTGTTTATTCATATATGGATTC
TTTTAAGATTGCTTTAGCTAGCCATGCTGTTAAACATGAGTACAACTATGACATTGAGAAGAATGATACAGGGAGATACA
GGGTGAATTGCGCACAAAAGAATGATGGCTGCCTGCGGAGACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis