Browse Element(s) Details


OsAffx.30516.1.S1_at

Description tigr:9638.m01982
TID=OsAffx.30516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2328011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23250OsAffx.18360.1.S1_at11/1110+11801259..11803696hypothetical protein
LOC_Os10g23260OsAffx.18361.1.S1_at11/1110+11812688..11813821hypothetical protein
LOC_Os10g23270OsAffx.30515.5.S1_x_at11/1110+11815379..11816885hypothetical protein
LOC_Os10g23270OsAffx.30515.5.S1_at11/1110+11815379..11816885hypothetical protein
LOC_Os10g23280OsAffx.30516.1.S1_at11/1110+11818655..11819604hypothetical protein
LOC_Os10g23280OsAffx.19669.1.S1_at1/1110+11818655..11819604hypothetical protein
LOC_Os10g23290Os.47463.1.S1_x_at6/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23290Os.14491.2.S1_x_at5/1110+11823153..11832831transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23300OsAffx.18362.1.S1_at11/1110+11843927..11844995hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30516.1.S1_at--155--4611Chr10:11819491..11819512 (22 bp)
GCGACTGTATGCGATGCGGAAGATT
LOC_Os10g23280
OsAffx.30516.1.S1_at--662--3951Chr10:11818843..11818863 (21 bp)
CGGAAGATTGGAGGCTGTCAGTATT
LOC_Os10g23280
OsAffx.30516.1.S1_at--221--8151Chr10:11818796..11818820 (25 bp)
GGACACTGGAGTGCGGACACATCTT
LOC_Os10g23280
OsAffx.30516.1.S1_at--200--6111Chr10:11818788..11818812 (25 bp)
GAGTGCGGACACATCTTGCCCTTGC
LOC_Os10g23280
OsAffx.30516.1.S1_at--917--10691Chr10:11818773..11818797 (25 bp)
TTGCCCTTGCTCCAATTCATGCAGG
LOC_Os10g23280
OsAffx.30516.1.S1_at--686--9091Chr10:11818766..11818790 (25 bp)
TGCTCCAATTCATGCAGGTCACCTA
LOC_Os10g23280
OsAffx.30516.1.S1_at--989--10531Chr10:11818758..11818782 (25 bp)
TTCATGCAGGTCACCTACAGGCAGT
LOC_Os10g23280
OsAffx.30516.1.S1_at--389--5011Chr10:11818753..11818777 (25 bp)
GCAGGTCACCTACAGGCAGTGGCAC
LOC_Os10g23280
OsAffx.30516.1.S1_at--790--1591Chr10:11818706..11818730 (25 bp)
AGCTCCACAGGCTATCATGCAGGAT
LOC_Os10g23280
OsAffx.30516.1.S1_at--48--2131Chr10:11818700..11818724 (25 bp)
ACAGGCTATCATGCAGGATCGGGCT
LOC_Os10g23280
OsAffx.30516.1.S1_at--417--10171Chr10:11818694..11818718 (25 bp)
TATCATGCAGGATCGGGCTGCTGGA
LOC_Os10g23280
Target Sequence 
GCGACTGTATGCGATGCGGAAGATTGGAGGCTGTCAGTATTATCAGTGGAAGGATGAAATGTTGGACACTGGAGTGCGGA
CACATCTTGCCCTTGCTCCAATTCATGCAGGTCACCTACAGGCAGTGGCACCACTTGGTGGTTTCCCTACTGCAGCTCCA
CAGGCTATCATGCAGGATCGGGCTGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis