Browse Element(s) Details


Os.6164.1.S1_at

Description gb:AK068949.1
DB_XREF= gi:32978973
TID=Os.6164.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003M16, full insert sequence.
FL= gb:AK068949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0992010/11Possible metal-binding domain in RNase L inhibitor, RLI family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09900Os.20151.1.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900Os.20151.2.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900OsAffx.30514.2.S1_s_at1/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09910Os.49776.1.S1_at11/113+4915589..4920154Aspartate aminotransferase, putative, expressed
LOC_Os03g09920Os.6164.1.S1_at10/113+4920519..4924675Possible metal-binding domain in RNase L inhibitor, RLI family protein, expressed
LOC_Os03g09930Os.18597.1.S1_at11/113+4925440..4930058Sulfate transporter 2.1, putative, expressed
LOC_Os03g09940Os.57371.1.S1_at11/113+4936619..4938565Sulfate transporter 2.1, putative, expressed
LOC_Os03g09950NANA3+4946364..4946609retrotransposon protein, putative, unclassified
LOC_Os03g09960NANA3+4949508..4950131hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6164.1.S1_at--1078--2831Chr03:4921045..4921154 (25 bp)
AAGTCACCTGTAAACGCGGCAGAGA
LOC_Os03g09920
Os.6164.1.S1_at--780--8191Chr03:4921001..4921025 (25 bp)
GGAAGGATCTGACGCTGACTCCGAC
LOC_Os03g09920
Os.6164.1.S1_at--477--6231Chr03:4920976..4921000 (25 bp)
GATGGCTTGCCACCTCTAGAGGAAA
LOC_Os03g09920
Os.6164.1.S1_at--242--8091Chr03:4920861..4920885 (25 bp)
GGAGCTGTCCAGCACTTTTAAATGT
LOC_Os03g09920
Os.6164.1.S1_at--1045--4831Chr03:4920813..4920837 (25 bp)
GCTAAGTGCTGTGATTCGAGCCAAA
LOC_Os03g09920
Os.6164.1.S1_at--163--1011Chr03:4920786..4920810 (25 bp)
AGGATCTTCCGATGTCCAATGAAAA
LOC_Os03g09920
Os.6164.1.S1_at--890--3071Chr03:4920720..4920744 (25 bp)
AATCACAGTACCCTTATTGCGTTGC
LOC_Os03g09920
Os.6164.1.S1_at--589--71Chr03:4920705..4920729 (25 bp)
ATTGCGTTGCGCTTGCTAAAATCAT
LOC_Os03g09920
Os.6164.1.S1_at--51--2271Chr03:4920687..4920711 (25 bp)
AAATCATTTGAGTTTCTCTGTTCCA
LOC_Os03g09920
Os.6164.1.S1_at--120--3171Chr03:4920634..4920658 (25 bp)
AATTGCAATGGACAGCAGCTGGTTT
LOC_Os03g09920
Os.6164.1.S1_at--308--9811NONE
TAACACCTGCATTACTTTTGACTCC
NONE
Target Sequence 
AAGTCACCTGTAAACGCGGCAGAGAAATCACACCAAAGCACAGAGGAAGGATCTGACGCTGACTCCGACGATGGCTTGCC
ACCTCTAGAGGAAAACCTGAANCACCTGAACTTTAACCAAGATGACGAAAGTGAGGAGGAAAGTGAAAGTGATGAGTAAC
AAATGGCGTCAGAAGGGAACATTTGGAGCTGTCCAGCACTTTTAAATGTGTACTTGAGTAAGTTAATTTTTGGCTAAGTG
CTGTGATTCGAGCCAAAATAGGATCTTCCGATGTCCAATGAAAACAATCTTCAATGGTCTTGAGGACAGATCATGGCTCA
GAAAGAATCACAGTACCCTTATTGCGTTGCGCTTGCTAAAATCATTTGAGTTTCTCTGTTCCANTCTTAAGTACAGACAT
GAANAAAACNAAATTGCAATGGACAGCAGCTGGTTTAGTCATTGCAATGGACAGGTTAGATACCTGAAATCACTTTGTAT
TATTCCAAATTGAGCTATGATCTTACATGTATTTTTNGATTGATACATAACACCTGCATTACTTTTGACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis