Browse Element(s) Details


Os.49776.1.S1_at

Description gb:AY338236.1
DB_XREF= gi:37703721
GEN=ALD1
TID=Os.49776.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49776 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative aminotransferase ALD1 (ALD1) mRNA, complete cds.
PROD=putative aminotransferase ALD1
FL= gb:AY338236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0991011/11Aspartate aminotransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g09880Os.49607.1.S1_at11/113+4892431..4893180membrane protein, putative, expressed
LOC_Os03g09900Os.20151.1.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900Os.20151.2.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900OsAffx.30514.2.S1_s_at1/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09910Os.49776.1.S1_at11/113+4915589..4920154Aspartate aminotransferase, putative, expressed
LOC_Os03g09920Os.6164.1.S1_at10/113+4920519..4924675Possible metal-binding domain in RNase L inhibitor, RLI family protein, expressed
LOC_Os03g09930Os.18597.1.S1_at11/113+4925440..4930058Sulfate transporter 2.1, putative, expressed
LOC_Os03g09940Os.57371.1.S1_at11/113+4936619..4938565Sulfate transporter 2.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009507cellular_componentchloroplast
GO:0004069molecular_functionaspartate transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49776.1.S1_at--939--7531Chr03:4919651..4919675 (25 bp)
GTGGCGATCGAGGTGTCGTCCTTCT
LOC_Os03g09910
Os.49776.1.S1_at--128--6151Chr03:4919660..4919684 (25 bp)
GAGGTGTCGTCCTTCTCCAAGTTCG
LOC_Os03g09910
Os.49776.1.S1_at--765--10631Chr03:4919768..4919792 (25 bp)
TTCGACCGCGTGGTGTGCACGTGCT
LOC_Os03g09910
Os.49776.1.S1_at--821--7451Chr03:4919780..4919804 (25 bp)
GTGTGCACGTGCTTCAACGGCGCGT
LOC_Os03g09910
Os.49776.1.S1_at--764--5351Chr03:4920022..4920046 (25 bp)
GAAGACGCACGTCATCACCGTGCCT
LOC_Os03g09910
Os.49776.1.S1_at--619--391Chr03:4920035..4920059 (25 bp)
ATCACCGTGCCTGGCAGCGGGTTCG
LOC_Os03g09910
Os.49776.1.S1_at--240--6131Chr03:4920071..4920095 (25 bp)
GAGGGCTTCATCAGGGTCAGCGCCT
LOC_Os03g09910
Os.49776.1.S1_at--499--7111Chr03:4920086..4920110 (25 bp)
GTCAGCGCCTTCAACAGCAGGGACA
LOC_Os03g09910
Os.49776.1.S1_at--547--8151Chr03:4920106..4920130 (25 bp)
GGACAAGGTCCTCGAAGCGTGCCAA
LOC_Os03g09910
Os.49776.1.S1_at--633--5411Chr03:4920119..4920143 (25 bp)
GAAGCGTGCCAACGCCTCAAAAGCT
LOC_Os03g09910
Os.49776.1.S1_at--456--1811Chr03:4920130..4920154 (25 bp)
ACGCCTCAAAAGCTTCCTCGCATGA
LOC_Os03g09910
Target Sequence 
GTGGCGATCGAGGTGTCGTCCTTCTCCAAGTTCGCCGGGTTCACGGGCGTCCGGCTGGGGTGGGCTGTGGTGCCCGACGA
GCTGCTCTACTCCGACGGGGTCCCCGTGGCGCGGGACTTCGACCGCGTGGTGTGCACGTGCTTCAACGGCGCGTCGGGCA
TCGCGCAGGCGGGCGGGGTGGCGTGCCTGTCGACGGAGGAAGGCCGCGGCGCAGTGGCGCGGGTGGTCGGGGTGTACAGG
GAGAACGCGCGGGTGCTGGTGGAGACGTTCAGGTCGCTGGGGAAGGAGGTGCACGGCGGCGGCGACGCGCCGTACGTGTG
GGTGAGGTTCCCGGGGCGGCGGTCGTGGGACGTGTTCGCGGAGATCCTGGAGAAGACGCACGTCATCACCGTGCCTGGCA
GCGGGTTCGGCCCCGGCGGCGAGGGCTTCATCAGGGTCAGCGCCTTCAACAGCAGGGACAAGGTCCTCGAAGCGTGCCAA
CGCCTCAAAAGCTTCCTCGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis