Browse Element(s) Details


Os.15761.1.S1_at

Description gb:AK073045.1
DB_XREF= gi:32983068
TID=Os.15761.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033007C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033007C02, full insert sequence.
FL= gb:AK073045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0984011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09810NANA3+4855628..4859260Polyamine oxidase precursor, putative
LOC_Os03g09820OsAffx.25028.1.S1_at11/113+4865505..4866431Transcription factor TFIIB repeat family protein
LOC_Os03g09830OsAffx.3177.1.S1_at11/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_x_at1/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_at1/113+4868609..4871374expressed protein
LOC_Os03g09840Os.15761.1.S1_at11/113+4873640..4876148C2 domain-containing protein, putative, expressed
LOC_Os03g09850OsAffx.3178.1.S1_at11/113+4881472..4882725auxin-responsive protein, putative, expressed
LOC_Os03g09860Os.18202.1.S1_at11/113+4885363..4887908acetyltransferase, GNAT family protein, expressed
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g09880Os.49607.1.S1_at11/113+4892431..4893180membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15761.1.S1_at--231--10471Chr03:4874104..4874128 (25 bp)
TTACCGATGGCGAGGCTGATTCTTC
LOC_Os03g09840
Os.15761.1.S1_at--959--8811Chr03:4874088..4874112 (25 bp)
TGATTCTTCCGATGTACCACTCAAG
LOC_Os03g09840
Os.15761.1.S1_at--1058--6631Chr03:4874057..4874081 (25 bp)
GTTGTCAAGCCTGTGATCAGCATTA
LOC_Os03g09840
Os.15761.1.S1_at--375--451Chr03:4874032..4874056 (25 bp)
ATCTCAACCCTGGTGAGTCTGTTGT
LOC_Os03g09840
Os.15761.1.S1_at--373--8651Chr03:4873926..4873950 (25 bp)
TGTGGAGAACAGTAGCCCCTCAACT
LOC_Os03g09840
Os.15761.1.S1_at--450--2651Chr03:4873871..4873895 (25 bp)
AAGCCATCCCCATCGAAGGGTTCTA
LOC_Os03g09840
Os.15761.1.S1_at--332--5051Chr03:4873831..4873855 (25 bp)
GCAGAGCCTTCTTCTAAGATGCTGA
LOC_Os03g09840
Os.15761.1.S1_at--543--2111Chr03:4873780..4873804 (25 bp)
ACATGGTTCGTATTTGTCCGACTGG
LOC_Os03g09840
Os.15761.1.S1_at--88--7251Chr03:4873765..4873789 (25 bp)
GTCCGACTGGCTGTCATGTGTTTAA
LOC_Os03g09840
Os.15761.1.S1_at--472--631Chr03:4873729..4873753 (25 bp)
ATGCTTCCTAAGTTTCTGTTGCTAC
LOC_Os03g09840
Os.15761.1.S1_at--166--10091Chr03:4873694..4873718 (25 bp)
TAGGACTCACTCTACACTTGTATTG
LOC_Os03g09840
Target Sequence 
TTACCGATGGCGAGGCTGATTCTTCCGATGTACCACTCAAGGGTGAAGTTGTCAAGCCTGTGATCAGCATTAATCTCAAC
CCTGGTGAGTCTGTTGTTCAGGAGGACATAGTTAACATGTACATGAAGAGCATGCAGCAGTTTACTGAATCCCTTGCAAA
GATGAAGCTGCCATTGGATGTGGAGAACAGTAGCCCCTCAACTGAAAACAACACTGACTCGATTACAGCTGAGAAGCCAT
CCCCATCGAAGGGTTCTAGGGTCTTCTATGGAAGCAGAGCCTTCTTCTAAGATGCTGATACTAAGTAGGATCGTGTATTA
GTATACATGGTTCGTATTTGTCCGACTGGCTGTCATGTGTTTAATAGTTATATATATGCTTCCTAAGTTTCTGTTGCTAC
AATGAGTTTCTAGGACTCACTCTACACTTGTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis