Browse Element(s) Details


Os.37071.2.S1_a_at

Description gb:AK064005.1
DB_XREF= gi:32974023
TID=Os.37071.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1166B08.7 (B1166B08.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-G04, full insert sequence.
FL= gb:AK064005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3558011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35530Os.24831.4.S1_x_at1/111+19983320..19984908retrotransposon protein, putative, unclassified
LOC_Os01g35540NANA1+19988653..19990001retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35550NANA1+19994363..19995652retrotransposon protein, putative, unclassified
LOC_Os01g35560NANA1+19999370..20002862retrotransposon protein, putative, unclassified
LOC_Os01g35580Os.37071.2.S1_a_at11/111+20008672..20013157expressed protein
LOC_Os01g35580OsAffx.3177.1.S1_at2/111+20008672..20013157expressed protein
LOC_Os01g35590OsAffx.23520.2.S1_s_at11/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.1.S1_at10/111+20016306..20019801hypothetical protein
LOC_Os01g35590OsAffx.23520.2.S1_at8/111+20016306..20019801hypothetical protein
LOC_Os01g35600Os.33878.1.S1_at2/111+20030003..20031908hypothetical protein
LOC_Os01g35610OsAffx.17756.3.S1_at8/111+20036915..20037289hypothetical protein
LOC_Os01g35610OsAffx.17756.1.S1_x_at3/111+20036915..20037289hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37071.2.S1_a_at--747--3591Chr01:20011447..20011469 (23 bp)
CATTCCCGATCGATCCTGATTATGA
LOC_Os01g35580
Os.37071.2.S1_a_at--586--6551Chr01:20011462..20011486 (25 bp)
GATTATGAGTTTGGTACTCCGCAAC
LOC_Os01g35580
Os.37071.2.S1_a_at--199--10251Chr01:20011471..20011495 (25 bp)
TTTGGTACTCCGCAACAACGAGTCC
LOC_Os01g35580
Os.37071.2.S1_a_at--128--1151Chr01:20011491..20011515 (25 bp)
AGTCCCATATCAAGCGGCATACACT
LOC_Os01g35580
Os.37071.2.S1_a_at--1001--10151Chr01:20011498..20011522 (25 bp)
TATCAAGCGGCATACACTACAGATG
LOC_Os01g35580
Os.37071.2.S1_a_at--1146--631Chr01:20011520..20011544 (25 bp)
ATGCAGAGAGAAATGACGCAGTTTC
LOC_Os01g35580
Os.37071.2.S1_a_at--220--2771Chr01:20011627..20011651 (25 bp)
AAGACTGAGCTGGAGAGACGTCTGA
LOC_Os01g35580
Os.37071.2.S1_a_at--767--1351Chr01:20011640..20011664 (25 bp)
AGAGACGTCTGAAGGCGGAGTTCAA
LOC_Os01g35580
Os.37071.2.S1_a_at--653--7351Chr01:20011669..20011693 (25 bp)
GTGAATGAGCAGCAATCTGACTTGG
LOC_Os01g35580
Os.37071.2.S1_a_at--312--6511Chr01:20011700..20011724 (25 bp)
GATATGCGAACTACCAGTCTCCTTA
LOC_Os01g35580
Os.37071.2.S1_a_at--873--3711Chr01:20011710..20011734 (25 bp)
CTACCAGTCTCCTTACCAGGCATAA
LOC_Os01g35580
Target Sequence 
CATTCCCGATCGATCCTGATTATGAGTTTGGTACTCCGCAACAACGAGTCCCATATCAAGCGGCATACACTACAGATGCA
GAGAGAAATGACGCAGTTTCTCGTGACAAGCGTGCTCAGAGGGCGGTTTGGAATACTAATCTCCGTCTTCTAGAGGTGAA
GAAATCCGCCCTGGAGAAGAAGAAGACTGAGCTGGAGAGACGTCTGAAGGCGGAGTTCAAGAAAGTGAATGAGCAGCAAT
CTGACTTGGGGGTTGGATATGCGAACTACCAGTCTCCTTACCAGGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37071.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis