Browse Element(s) Details


OsAffx.8481.1.S1_at

Description gb:NM_194969.1
DB_XREF= gi:37531297
TID=OsAffx.8481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0050E08.15), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0731011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07270Os.14909.2.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.47414.1.A1_s_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.3.S1_x_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.1.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07280NANA10+3829132..3829431hypothetical protein
LOC_Os10g07290Os.46472.1.S1_at11/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07290OsAffx.30430.1.S1_s_at1/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07300OsAffx.8482.1.S1_at11/1110+3839682..3840794retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g07310OsAffx.8481.1.S1_at11/1110+3843162..3845456retrotransposon protein, putative, unclassified
LOC_Os10g07320OsAffx.30329.1.S1_at11/1110+3847758..3848206hypothetical protein
LOC_Os10g07320OsAffx.4400.1.S1_x_at1/1110+3847758..3848206hypothetical protein
LOC_Os10g07329Os.53145.1.S1_at2/1110+3849596..3849880NA
LOC_Os10g07340Os.22675.1.S1_at11/1110+3852387..3855436expressed protein
LOC_Os10g07340Os.22675.1.S2_at10/1110+3852387..3855436expressed protein
LOC_Os10g07350OsAffx.18166.1.S1_at11/1110+3858087..3859531hypothetical protein
LOC_Os10g07370Os.25139.1.A1_at5/1110+3862435..3868801hypothetical protein
LOC_Os10g07370OsAffx.29612.1.S1_at1/1110+3862435..3868801hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8481.1.S1_at--947--3751Chr10:3845057..3845081 (25 bp)
CTCTCAATTTATGTGGTGCTGCTAT
LOC_Os10g07310
OsAffx.8481.1.S1_at--470--7311Chr10:3845072..3845096 (25 bp)
GTGCTGCTATAGAGACGCCTTTGGT
LOC_Os10g07310
OsAffx.8481.1.S1_at--1009--3051Chr10:3845164..3845188 (25 bp)
AATCTGTTTTGCTTGCATGCTTAGC
LOC_Os10g07310
OsAffx.8481.1.S1_at--930--10451Chr10:3845184..3845208 (25 bp)
TTAGCTGCAGGCACATGGGCGATTT
LOC_Os10g07310
OsAffx.8481.1.S1_at--619--8511Chr10:3845237..3845261 (25 bp)
TGGAAAACTAACCTCTGATCCCTCT
LOC_Os10g07310
OsAffx.8481.1.S1_at--1049--191Chr10:3845263..3845287 (25 bp)
ATTTGCCTCCAAAGCTGTTTCTTTT
LOC_Os10g07310
OsAffx.8481.1.S1_at--743--1091Chr10:3845295..3845319 (25 bp)
AGTGGAGACAACTGGCGCCGCAGAT
LOC_Os10g07310
OsAffx.8481.1.S1_at--365--3391Chr10:3845321..3845345 (25 bp)
CAGCGGAGCGATTTGGACGCCTCAA
LOC_Os10g07310
OsAffx.8481.1.S1_at--1057--9711Chr10:3845342..3845366 (25 bp)
TCAAGGGCCTTACTGCTTGCCAGTA
LOC_Os10g07310
OsAffx.8481.1.S1_at--186--4351Chr10:3845361..3845385 (25 bp)
CCAGTACTCGAAGGGCAACAGGCTC
LOC_Os10g07310
OsAffx.8481.1.S1_at--703--2611Chr10:3845387..3845411 (25 bp)
AACCCCTGATGAAGACCTGAATGAT
LOC_Os10g07310
Target Sequence 
CTCTCAATTTATGTGGTGCTGCTATAGAGACGCCTTTGGTTGGGATAATATTCCTAGTTCTAGGGAAGATCTTTTAGAGA
AGTTAAACATTCAAAAAGATGGACAAAAATCTGTTTTGCTTGCATGCTTAGCTGCAGGCACATGGGCGATTTGGCTGATG
CGAAACGATTGGGTTTTCAATGGAAAACTAACCTCTGATCCCTCTCATTTGCCTCCAAAGCTGTTTCTTTTCTTCTACAG
TGGAGACAACTGGCGCCGCAGATCCAGCGGAGCGATTTGGACGCCTCAAGGGCCTTACTGCTTGCCAGTACTCGAAGGGC
AACAGGCTCAAACCCCTGATGAAGACCTGAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis