Browse Element(s) Details


Os.46472.1.S1_at

Description gb:AK073394.1
DB_XREF= gi:32983417
TID=Os.46472.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-1,3-glucanase (OSJNBa0050E08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044A03, full insert sequence.
FL= gb:AK073394.1 gb:AK120028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0729011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07270Os.14909.2.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.47414.1.A1_s_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.3.S1_x_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.1.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07280NANA10+3829132..3829431hypothetical protein
LOC_Os10g07290Os.46472.1.S1_at11/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07290OsAffx.30430.1.S1_s_at1/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07300OsAffx.8482.1.S1_at11/1110+3839682..3840794retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g07310OsAffx.8481.1.S1_at11/1110+3843162..3845456retrotransposon protein, putative, unclassified
LOC_Os10g07320OsAffx.30329.1.S1_at11/1110+3847758..3848206hypothetical protein
LOC_Os10g07320OsAffx.4400.1.S1_x_at1/1110+3847758..3848206hypothetical protein
LOC_Os10g07329Os.53145.1.S1_at2/1110+3849596..3849880NA
LOC_Os10g07340Os.22675.1.S1_at11/1110+3852387..3855436expressed protein
LOC_Os10g07340Os.22675.1.S2_at10/1110+3852387..3855436expressed protein
LOC_Os10g07350OsAffx.18166.1.S1_at11/1110+3858087..3859531hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46472.1.S1_at--635--6171Chr10:3834527..3834551 (25 bp)
GAGGATGGCGGCTACTACAGCATCT
LOC_Os10g07290
Os.46472.1.S1_at--340--3511Chr10:3833740..3833764 (25 bp)
CATGGTGGACACAAGCAGCTGTAGC
LOC_Os10g07290
Os.46472.1.S1_at--1124--10011Chr10:3833719..3833743 (25 bp)
TAGCAGCATGTGTGGCTGTCCTGAT
LOC_Os10g07290
Os.46472.1.S1_at--186--931Chr10:3833649..3833673 (25 bp)
AGGAAGGAAGCCTCTGGTTTCTAAT
LOC_Os10g07290
Os.46472.1.S1_at--904--3731Chr10:3833629..3833653 (25 bp)
CTAATGGAGTCAGAGGAGGCGCACA
LOC_Os10g07290
Os.46472.1.S1_at--1090--10831Chr10:3833604..3833628 (25 bp)
TTGGGATGCATTGCTTCTTGCTGTT
LOC_Os10g07290
Os.46472.1.S1_at--785--8611Chr10:3833556..3833580 (25 bp)
TGGTGGTGAATGTCCCTTAATTTAA
LOC_Os10g07290
Os.46472.1.S1_at--531--9751Chr10:3833539..3833563 (25 bp)
TAATTTAATCTCTGTCCTTGCCATG
LOC_Os10g07290
Os.46472.1.S1_at--2--9751Chr10:3833479..3833503 (25 bp)
TAATCTAATGGGTTGGTCAGTGTCA
LOC_Os10g07290
Os.46472.1.S1_at--836--10311Chr10:3833438..3833462 (25 bp)
TTTCTCTGTTTTGAAGCTCTTCCTC
LOC_Os10g07290
Os.46472.1.S1_at--93--2691Chr10:3833425..3833449 (25 bp)
AAGCTCTTCCTCTCTTGAATTTTGA
LOC_Os10g07290
Target Sequence 
GAGGATGGCGGCTACTACAGCATCTCGGCCTCAGCAAAGCCGGCAGGTTGGTGGACATGGTGGACACAAGCAGCTGTAGC
AGCATGTGTGGCTGTCCTGATGAGGATGATGGCATTGTGATTGTGAGCAGATCAAGTGATGGTAGTAGGAAGGAAGCCTC
TGGTTTCTAATGGAGTCAGAGGAGGCGCACATTGGGATGCATTGCTTCTTGCTGTTGCTGCAGTGGACAAAGGCATTGAT
GGTGGTGAATGTCCCTTAATTTAATCTCTGTCCTTGCCATGTTGTTGTAATTGATATGGCCTTGTAATTGAGGGGGTAAT
CTAATGGGTTGGTCAGTGTCATTAAACTAGACTTTTTTTTCTCTGTTTTGAAGCTCTTCCTCTCTTGAATTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis