Browse Element(s) Details


Os.22675.1.S2_at

Description gb:AK100367.1
DB_XREF= gi:32985576
TID=Os.22675.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0690B02.17 (P0690B02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083P20, full insert sequence.
FL= gb:AK100367.1 gb:AK071213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0734010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07280NANA10+3829132..3829431hypothetical protein
LOC_Os10g07290Os.46472.1.S1_at11/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07290OsAffx.30430.1.S1_s_at1/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07300OsAffx.8482.1.S1_at11/1110+3839682..3840794retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g07310OsAffx.8481.1.S1_at11/1110+3843162..3845456retrotransposon protein, putative, unclassified
LOC_Os10g07320OsAffx.30329.1.S1_at11/1110+3847758..3848206hypothetical protein
LOC_Os10g07320OsAffx.4400.1.S1_x_at1/1110+3847758..3848206hypothetical protein
LOC_Os10g07329Os.53145.1.S1_at2/1110+3849596..3849880NA
LOC_Os10g07340Os.22675.1.S1_at11/1110+3852387..3855436expressed protein
LOC_Os10g07340Os.22675.1.S2_at10/1110+3852387..3855436expressed protein
LOC_Os10g07350OsAffx.18166.1.S1_at11/1110+3858087..3859531hypothetical protein
LOC_Os10g07370Os.25139.1.A1_at5/1110+3862435..3868801hypothetical protein
LOC_Os10g07370OsAffx.29612.1.S1_at1/1110+3862435..3868801hypothetical protein
LOC_Os10g07380OsAffx.30330.1.S1_at9/1110+3875801..3880800expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22675.1.S2_at--575--4432Chr10:3854858..3854882 (25 bp)
GCCATCTGCCCATCTGTAATATAGT
LOC_Os10g07340
Os.22675.1.S2_at--371--1434Chr10:3854925..3854949 (25 bp)
AGAAAATGAACCTTGCAGCTGAATG
LOC_Os10g07340
Os.22675.1.S2_at--553--5073Chr10:3854939..3854963 (25 bp)
GCAGCTGAATGATTTATTCCGATCA
LOC_Os10g07340
Os.22675.1.S2_at--196--2993Chr10:3855026..3855050 (25 bp)
AATGTTCAATTGTAGGCTGGGAGTA
LOC_Os10g07340
Os.22675.1.S2_at--632--3134Chr10:3855083..3855107 (25 bp)
AATTTTTGCTTTCTCATTTTCAGGT
LOC_Os10g07340
Os.22675.1.S2_at--1040--5032Chr10:3855111..3855135 (25 bp)
GCAGAGTACATTATGCTCATGTGAA
LOC_Os10g07340
Os.22675.1.S2_at--803--7013Chr10:3855145..3855169 (25 bp)
GTACATTTTCAGATCCGGTTGCTAG
LOC_Os10g07340
Os.22675.1.S2_at--995--551Chr10:3855157..3855181 (25 bp)
ATCCGGTTGCTAGCTAGTGCCATGG
LOC_Os10g07340
Os.22675.1.S2_at--351--1771Chr10:3855257..3855281 (25 bp)
ACCGGCCGGTGTCTAGATCTATGTT
LOC_Os10g07340
Os.22675.1.S2_at--232--8833Chr10:3855318..3855342 (25 bp)
TGATTGTTTCATGCCGTGTAGGCTT
LOC_Os10g07340
Os.22675.1.S2_at--928--7452Chr01:10925664..10925943 (25 bp)
GTGTCCGTGAAAAATACTTGGGTCT
NONE
Target Sequence 
GCCATCTGCCCATCTGTAATATAGTGNAGNGGAATGATTCATTCNGCTCAGTTGAACTAGAAAATCTAGAAAATGAACCT
TGCAGCTGAATGATTTATTCCGATCATCTTGANCAAATAGATTTATTTCTGGATTTGGTATTTGNTTTCTCATTCNGCTG
AGTTGCACAATGTTCAATTGTAGGCTGGGAGTAAGNCGAGCCCAAGAACANTATAGTCCGGATTTAATTTTTGCTTTCTC
ATTTTCAGGTATAGCAGAGTACATTATGCTCATGTGAATACAACCAAGTACATTTTCAGATCCGGTTGCTAGCTAGTGCC
ATGGAGGAGCAGCAACGGCCACCTCCATGACGCGACTCCGTCAATGTCCAGCCAGCGCCAGCCATCTNCGCCACCAACCA
CCGGCCGGTGTCTAGATCTATGTTATATTGTCATGGAGTAAAATGTTTACTCACACCNTATGATTGTTTCATGCCGTGTA
GGCTTATTGTAAAAAAGTTACTATTNTCATATTTCTCNTTGNATTCATATCGNGTAGGNNTANTNNNAAAACNTTTTNCC
NTGTGNNTAATAANGTGTCCGTGAAAAATACTTGGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22675.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis