Browse Element(s) Details


OsAffx.8482.1.S1_at

Description gb:NM_194968.1
DB_XREF= gi:37531295
TID=OsAffx.8482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0050E08.14), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0730011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07270Os.14909.2.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.47414.1.A1_s_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.3.S1_x_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270Os.14909.1.S1_at11/1110+3815670..3825587Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07280NANA10+3829132..3829431hypothetical protein
LOC_Os10g07290Os.46472.1.S1_at11/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07290OsAffx.30430.1.S1_s_at1/1110+3833354..3835794Glycosyl hydrolases family 17 protein, expressed
LOC_Os10g07300OsAffx.8482.1.S1_at11/1110+3839682..3840794retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g07310OsAffx.8481.1.S1_at11/1110+3843162..3845456retrotransposon protein, putative, unclassified
LOC_Os10g07320OsAffx.30329.1.S1_at11/1110+3847758..3848206hypothetical protein
LOC_Os10g07320OsAffx.4400.1.S1_x_at1/1110+3847758..3848206hypothetical protein
LOC_Os10g07329Os.53145.1.S1_at2/1110+3849596..3849880NA
LOC_Os10g07340Os.22675.1.S1_at11/1110+3852387..3855436expressed protein
LOC_Os10g07340Os.22675.1.S2_at10/1110+3852387..3855436expressed protein
LOC_Os10g07350OsAffx.18166.1.S1_at11/1110+3858087..3859531hypothetical protein
LOC_Os10g07370Os.25139.1.A1_at5/1110+3862435..3868801hypothetical protein
LOC_Os10g07370OsAffx.29612.1.S1_at1/1110+3862435..3868801hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8482.1.S1_at--279--2451Chr10:3840352..3840376 (25 bp)
AAAATAGCCGTCATCCACTCAATGG
LOC_Os10g07300
OsAffx.8482.1.S1_at--39--2971Chr10:3840332..3840356 (25 bp)
AATGGAGCCGCTTGCCGACTTGAAG
LOC_Os10g07300
OsAffx.8482.1.S1_at--590--7711Chr10:3840289..3840313 (25 bp)
GGGTGCATGGTGTCACTTAACCGCT
LOC_Os10g07300
OsAffx.8482.1.S1_at--181--8871Chr10:3840209..3840233 (25 bp)
TGATGACTTCACCTGGACTCCAGAA
LOC_Os10g07300
OsAffx.8482.1.S1_at--662--5051Chr10:3840178..3840202 (25 bp)
GCAGCCTTCAACGACTTTAAGCGGT
LOC_Os10g07300
OsAffx.8482.1.S1_at--325--6571Chr10:3839964..3839988 (25 bp)
GATTCAGAAACTACGCCACGCAATA
LOC_Os10g07300
OsAffx.8482.1.S1_at--954--5191Chr10:3839945..3839969 (25 bp)
GCAATATTCATCACGGTCCGCAAAC
LOC_Os10g07300
OsAffx.8482.1.S1_at--167--8791Chr10:3839912..3839936 (25 bp)
TGTTTTCAAGCTCATCCGGTGTCAG
LOC_Os10g07300
OsAffx.8482.1.S1_at--326--4191Chr10:3839872..3839896 (25 bp)
CCCTCCGCTATGTCATGTTTAACAA
LOC_Os10g07300
OsAffx.8482.1.S1_at--1131--2051Chr10:3839787..3839811 (25 bp)
ACTTCGGGTAGCCATCAAGTCTCAA
LOC_Os10g07300
OsAffx.8482.1.S1_at--842--7311Chr10:3839762..3839786 (25 bp)
GTGCTCTCTGACTTCATCACTGAAT
LOC_Os10g07300
Target Sequence 
AAAATAGCCGTCATCCACTCAATGGAGCCGCTTGCCGACTTGAAGAAGCTGCACAAGCTGACTGGGTGCATGGTGTCACT
TAACCGCTTCACGTCCCAACTAGGCGAACGTGGCATGCCATTCTTCATGCTCCTCAAAAAGTCTGATGACTTCACCTGGA
CTCCAGAAGCCCAAGCAGCCTTCAACGACTTTAAGCGGTGTCGAAGAGAAGAAGATGGATCGATCAAGAAGATACAACGA
TCAGTCTACTTCATTAGTGAAGTCCTTAGTGAGTCGAAGACGCGATACACGCAGATTCAGAAACTACGCCACGCAATATT
CATCACGGTCCGCAAACTCAGCCACTGTTTTCAAGCTCATCCGGTGTCAGTCGTCACCTCTCACCCCCTCCGCTATGTCA
TGTTTAACAAAGAGGCCACCGGACGCATCGCCAAGTGGGCACAGCTGATGGCGTTTGACATCTCCTTCCAACTTCGGGTA
GCCATCAAGTCTCAAGTGCTCTCTGACTTCATCACTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis