Browse Element(s) Details


Os.18743.2.S1_x_at

Description gb:AK102456.1
DB_XREF= gi:32987665
TID=Os.18743.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine proteinase (B1143G03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094B09, full insert sequence.
FL= gb:AK102456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g563208/11subtilase family protein, putative, expressed
LOC_Os07g084302/11Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56290OsAffx.23808.2.S1_x_at11/111+32751304..32754355expressed protein
LOC_Os01g56290Os.49991.1.S1_at11/111+32751304..32754355expressed protein
LOC_Os01g56290OsAffx.23808.2.S1_at8/111+32751304..32754355expressed protein
LOC_Os01g56300Os.20810.1.S1_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.1.S1_a_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.3.S1_x_at11/111+32759969..32766374expressed protein
LOC_Os01g56300OsAffx.28409.1.S1_at1/111+32759969..32766374expressed protein
LOC_Os01g56310Os.42028.1.S1_at11/111+32767019..32770164Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein
LOC_Os01g56350Os.26864.1.S1_at11/111+32797127..32803472expressed protein
LOC_Os01g56350Os.26864.2.S1_x_at11/111+32797127..32803472expressed protein
LOC_Os01g56360Os.22828.1.A1_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.22828.1.A2_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.45996.1.A1_x_at7/111+32801992..32805994condensation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0006508biological_processproteolysis
GO:0009507cellular_componentchloroplast
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004289molecular_functionsubtilase activity
GO:0004834molecular_functiontryptophan synthase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18743.2.S1_x_at--1088--5271Chr01:32782168..32782192 (25 bp)
GAAGTTCCCTTATTTTAGCCCTGCA
LOC_Os01g56320
Os.18743.2.S1_x_at--937--7891Chr01:32782199..32782223 (25 bp)
GGTTCTGCATTATCGACTACTACAA
LOC_Os01g56320
Os.18743.2.S1_x_at--240--2251Chr01:32782279..32782303 (25 bp)
AAATTCAACTCAATCTCCAGCTACA
LOC_Os01g56320
Os.18743.2.S1_x_at--162--3391Chr01:32782296..32782320 (25 bp)
CAGCTACACCTTTTGACATGGGAAA
LOC_Os01g56320
Os.18743.2.S1_x_at--939--3011Chr01:32782331..32782355 (25 bp)
AATGCTACTGCTGCTTTGGATCCTG
LOC_Os01g56320
Os.18743.2.S1_x_at--810--7971Chr01:32782348..32782372 (25 bp)
GGATCCTGGGCTCATATTTGATTCC
LOC_Os01g56320
Os.18743.2.S1_x_at--957--8811Chr01:32782366..32782712 (25 bp)
TGATTCCAGTTACGACGACTTCTTC
LOC_Os01g56320
Os.18743.2.S1_x_at--701--5691Chr01:32782704..32782726 (23 bp)
GACTTCTTCTCCTTTCTATGTGGGT
LOC_Os01g56320
Os.18743.2.S1_x_at--163--3811NONE
CTCCTTTCTATGTGGGTTCGGTATA
NONE
Os.18743.2.S1_x_at--768--6711Chr07:4329229..4329253 (25 bp)
GTTCGGTATATCGACTCCAGAGCAT
LOC_Os07g08430
Os.18743.2.S1_x_at--801--5291Chr07:4328985..4329009 (25 bp)
GAAGGCTGCATTGCCCTGAAACAAT
LOC_Os07g08430
Target Sequence 
GAAGTTCCCTTATTTTAGCCCTGCAGCTATAGGTTCTGCATTATCGACTACTACAAGTCTCAGTGACAGGGAGGGGAATC
CAATCATGGCACAGAGAACATACGGCAATCCAAATTCAACTCAATCTCCAGCTACACCTTTTGACATGGGAAATGGATTT
GTCAATGCTACTGCTGCTTTGGATCCTGGGCTCATATTTGATTCCAGTTACGACGACTTCTTCTCCTTTCTATGTGGGTT
CGGTATATCGACTCCAGAGCATGTGAAGCAGATTGCGGGATGGGGCGCAGATGGTGTGATCATTGGGAGCGCTATGGTGA
GGCAATTGGGCGAAGCTGCTTCACCCGAAGAAGGATTGAAGAAGCTAGAAGAGCTAGCCAAGAGCCTGAAGGCTGCATTG
CCCTGAAACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18743.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis