Browse Element(s) Details


Os.42028.1.S1_at

Description gb:NM_191403.1
DB_XREF= gi:34909889
GEN=B1143G03.12
TID=Os.42028.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42028 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative lipoic acid synthase-like protein (B1143G03.12), mRNA.
PROD=putative lipoic acid synthase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5631011/11Lipoic acid synthetase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56280Os.14919.1.S1_at1/111+32741923..32744159hypothetical protein
LOC_Os01g56290OsAffx.23808.2.S1_x_at11/111+32751304..32754355expressed protein
LOC_Os01g56290Os.49991.1.S1_at11/111+32751304..32754355expressed protein
LOC_Os01g56290OsAffx.23808.2.S1_at8/111+32751304..32754355expressed protein
LOC_Os01g56300Os.20810.1.S1_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.1.S1_a_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.3.S1_x_at11/111+32759969..32766374expressed protein
LOC_Os01g56300OsAffx.28409.1.S1_at1/111+32759969..32766374expressed protein
LOC_Os01g56310Os.42028.1.S1_at11/111+32767019..32770164Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006546biological_processglycine catabolism
GO:0009105biological_processlipoic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0017140molecular_functionlipoic acid synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42028.1.S1_at--203--7531Chr01:32767826..32767850 (25 bp)
GTGGACTATGTTGTACTGACCAGTG
LOC_Os01g56310
Os.42028.1.S1_at--962--6951Chr01:32767878..32767901 (24 bp)
GTAGCAGCCATTTTGCGCAGACAGA
LOC_Os01g56310
Os.42028.1.S1_at--625--8031Chr01:32768026..32768050 (25 bp)
GGAGTGCTTGACCTCAGATTTTCGA
LOC_Os01g56310
Os.42028.1.S1_at--456--1051Chr01:32768050..32768074 (25 bp)
AGGTGACCTGGAGGCTGTTTCAGCT
LOC_Os01g56310
Os.42028.1.S1_at--1050--8771Chr01:32768065..32768089 (25 bp)
TGTTTCAGCTTTGGCCAACTCTGGT
LOC_Os01g56310
Os.42028.1.S1_at--57--2551Chr01:32768081..32768105 (25 bp)
AACTCTGGTCTGGATGTATTTGCGC
LOC_Os01g56310
Os.42028.1.S1_at--81--6891Chr01:32768096..32768120 (25 bp)
GTATTTGCGCACAACATCGAGACTG
LOC_Os01g56310
Os.42028.1.S1_at--195--3551Chr01:32768110..32768134 (25 bp)
CATCGAGACTGTGAGGAGCCTGCAA
LOC_Os01g56310
Os.42028.1.S1_at--521--6651Chr01:32769296..32769320 (25 bp)
GTTGATATCTTGACACTGGGCCAGT
LOC_Os01g56310
Os.42028.1.S1_at--325--7551Chr01:32769313..32769415 (25 bp)
GGGCCAGTATTTGCAGCCCACTGAA
LOC_Os01g56310
Os.42028.1.S1_at--1010--1451Chr01:32769478..32769502 (25 bp)
AGAATCGGTGGGTTTCCGCTATGTT
LOC_Os01g56310
Target Sequence 
GTGGACTATGTTGTACTGACCAGTGTTGACAGAGATGACTTGCCTGATGGTGGTAGCAGCCATTTTGCGCAGACAGAGCT
CAAACCTGGGATACTGGTGGAGTGCTTGACCTCAGATTTTCGAGGTGACCTGGAGGCTGTTTCAGCTTTGGCCAACTCTG
GTCTGGATGTATTTGCGCACAACATCGAGACTGTGAGGAGCCTGCAAAGAATTGTTAGGGATCCTCGAGCAGGATATGAT
CAGAGCTTAGCTGTTCTGAAGCATGCAAAAAGTTGCAAAGAGGGTATGATAACTAAGTCCTCTATCATGCTTGGTCTTGG
AGAGACTGACGAGGAGGTGAAACAAGCCATGATTGACTTAAGGGCCATTGGTGTTGATATCTTGACACTGGGCCAGTATT
TGCAGCCCACTGAAAGACATTTGACAGTAAGGGAGTATGTAACTCNTGAGAAGTTCCAATTTTGGAAGGAGTATGGAGAA
TCGGTGGGTTTCCGCTATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis