Browse Element(s) Details


Os.32267.1.S1_at

Description gb:AK105465.1
DB_XREF= gi:32990674
TID=Os.32267.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-protein kinase (B1143G03.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full insert sequence.
FL= gb:AK105465.1 gb:AK101775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5633011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56300Os.20810.1.S1_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.1.S1_a_at11/111+32759969..32766374expressed protein
LOC_Os01g56300Os.20810.3.S1_x_at11/111+32759969..32766374expressed protein
LOC_Os01g56300OsAffx.28409.1.S1_at1/111+32759969..32766374expressed protein
LOC_Os01g56310Os.42028.1.S1_at11/111+32767019..32770164Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein
LOC_Os01g56350Os.26864.1.S1_at11/111+32797127..32803472expressed protein
LOC_Os01g56350Os.26864.2.S1_x_at11/111+32797127..32803472expressed protein
LOC_Os01g56360Os.22828.1.A1_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.22828.1.A2_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.45996.1.A1_x_at7/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56370Os.45996.1.A1_x_at11/111+32811584..32816819expressed protein
LOC_Os01g56370OsAffx.28228.1.S1_x_at1/111+32811584..32816819expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32267.1.S1_at--480--5331Chr01:32791314..32791338 (25 bp)
GAAGTTTGCCGAGACTGCTGAGAAA
LOC_Os01g56330
Os.32267.1.S1_at--22--931Chr01:32791353..32791377 (25 bp)
AGGCATCGATCGTCCTTCAATGGGA
LOC_Os01g56330
Os.32267.1.S1_at--1094--3311Chr01:32791467..32791491 (25 bp)
CACTCCCCTTGTGATGCCTGGAAAG
LOC_Os01g56330
Os.32267.1.S1_at--1050--3491Chr01:32791554..32791578 (25 bp)
CATGGGCGACCAAAGTGTTGCTAGC
LOC_Os01g56330
Os.32267.1.S1_at--381--8811Chr01:32791569..32791593 (25 bp)
TGTTGCTAGCATAGACTCCGACGGG
LOC_Os01g56330
Os.32267.1.S1_at--672--5911Chr01:32791643..32791667 (25 bp)
GAGCTAACAGTCTTTGCTTGTCACC
LOC_Os01g56330
Os.32267.1.S1_at--688--4931Chr01:32791658..32791682 (25 bp)
GCTTGTCACCTGCAGGCATTATTTA
LOC_Os01g56330
Os.32267.1.S1_at--488--7311Chr01:32791781..32791805 (25 bp)
GTGCTGTATATTGTCCATGCTGTGG
LOC_Os01g56330
Os.32267.1.S1_at--710--7751Chr01:32791804..32791828 (25 bp)
GGTGACTTGGATACTTATTGGCTTT
LOC_Os01g56330
Os.32267.1.S1_at--191--10811Chr01:32791827..32791851 (25 bp)
TTGTATTGTACTCTACCGCTGGTAT
LOC_Os01g56330
Os.32267.1.S1_at--1074--7851Chr01:32791847..32791871 (25 bp)
GGTATTAACCACCAGTTGATCTCTA
LOC_Os01g56330
Target Sequence 
GAAGTTTGCCGAGACTGCTGAGAAATGTGTTTCAGATGAAGGCATCGATCGTCCTTCAATGGGAGATGTGCTGTGGAACT
TGGAATTTGCCCTTCAAATGCAGGAAAGTGCAGAGGATAGTGGAAGCATTGGTTGTGGGATGTCAGATGAGGGCACTCCC
CTTGTGATGCCTGGAAAGAAGGATCCCAATGATCCATCGATCGAGTCAAGCACCACTACAACCACAACCACGTCCATAAG
CATGGGCGACCAAAGTGTTGCTAGCATAGACTCCGACGGGCTTACTCCTAGCGCTGTCTTCTCACAGATCATGAACCCCA
AGGGACGGTGAGCTAACAGTCTTTGCTTGTCACCTGCAGGCATTATTTATTCTTTAAACGTATTCTCATGAGTTTGTGAT
GTTGATTTTCTGTCAATTTATGGACCTGGAAGTCAGAGAGTTGTTCCATATTAGATATTTTTGTTTTGTGCTGTATATTG
TCCATGCTGTGGTGACTTGGATACTTATTGGCTTTGTATTGTACTCTACCGCTGGTATTAACCACCAGTTGATCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis