Browse Element(s) Details


Os.22828.1.A1_at

Description gb:CB964856
DB_XREF= gi:30226964
DB_XREF=NL12-E12
CLONE=NL12-E12
TID=Os.22828.1
CNT=23
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.22828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.10 (P0665A11.10), mRNA
FL= gb:AK120549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5636011/11condensation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein
LOC_Os01g56350Os.26864.1.S1_at11/111+32797127..32803472expressed protein
LOC_Os01g56350Os.26864.2.S1_x_at11/111+32797127..32803472expressed protein
LOC_Os01g56360Os.22828.1.A1_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.22828.1.A2_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.45996.1.A1_x_at7/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56370Os.45996.1.A1_x_at11/111+32811584..32816819expressed protein
LOC_Os01g56370OsAffx.28228.1.S1_x_at1/111+32811584..32816819expressed protein
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22828.1.A1_at--1103--9431Chr01:32805944..32805968 (25 bp)
TCGGAACAGGTTTCTCGGTCTAGCT
LOC_Os01g56360
Os.22828.1.A1_at--385--2111Chr01:32805939..32805963 (25 bp)
ACAGGTTTCTCGGTCTAGCTAGGCG
LOC_Os01g56360
Os.22828.1.A1_at--81--10312Chr01:32805934..32805958 (25 bp)
TTTCTCGGTCTAGCTAGGCGGTGGA
LOC_Os01g56360
Os.22828.1.A1_at--179--7531Chr01:32805914..32805938 (25 bp)
GTGGACGCGCGCATTGCCCATGCAA
LOC_Os01g56360
Os.22828.1.A1_at--867--10692Chr01:32805901..32805925 (25 bp)
TTGCCCATGCAAAACCAGCTCACTA
LOC_Os01g56360
Os.22828.1.A1_at--302--2432Chr01:32805891..32805915 (25 bp)
AAAACCAGCTCACTACACTACACTT
LOC_Os01g56360
Os.22828.1.A1_at--1049--9852Chr01:32805878..32805902 (25 bp)
TACACTACACTTTCTCTAGCTAGCG
LOC_Os01g56360
Os.22828.1.A1_at--657--10312Chr01:32805868..32805892 (25 bp)
TTTCTCTAGCTAGCGCGACGCAGTT
LOC_Os01g56360
Os.22828.1.A1_at--693--9992Chr01:32805858..32805882 (25 bp)
TAGCGCGACGCAGTTAAGCCGCGGC
LOC_Os01g56360
Os.22828.1.A1_at--426--9791Chr01:32805844..32805868 (25 bp)
TAAGCCGCGGCCCACACGAGATGGA
LOC_Os01g56360
Os.22828.1.A1_at--783--4171Chr01:32805834..32805858 (25 bp)
CCCACACGAGATGGACGCGGGTGCA
LOC_Os01g56360
Target Sequence 
TCGGAACAGGTTTCTCGGTCTAGCTAGGCGGTGGACGCGCGCATTGCCCATGCAAAACCAGCTCACTACACTACACTTTC
TCTAGCTAGCGCGACGCAGTTAAGCCGCGGCCCACACGAGATGGACGCGGGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22828.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis