Browse Element(s) Details


Os.26864.1.S1_at

Description gb:AK065563.1
DB_XREF= gi:32975581
TID=Os.26864.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.9 (P0665A11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034F04, full insert sequence.
FL= gb:AK065563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5635011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56320Os.18743.1.S1_at11/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_x_at8/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.18743.2.S1_at5/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56320Os.14909.1.S1_at1/111+32777730..32783352subtilase family protein, putative, expressed
LOC_Os01g56330Os.32267.1.S1_at11/111+32788726..32791901protein kinase family protein, putative, expressed
LOC_Os01g56340OsAffx.22940.5.S1_at3/111+32793340..32796110hypothetical protein
LOC_Os01g56340OsAffx.22940.5.S1_x_at1/111+32793340..32796110hypothetical protein
LOC_Os01g56350Os.26864.1.S1_at11/111+32797127..32803472expressed protein
LOC_Os01g56350Os.26864.2.S1_x_at11/111+32797127..32803472expressed protein
LOC_Os01g56360Os.22828.1.A1_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.22828.1.A2_at11/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56360Os.45996.1.A1_x_at7/111+32801992..32805994condensation domain-containing protein, putative, expressed
LOC_Os01g56370Os.45996.1.A1_x_at11/111+32811584..32816819expressed protein
LOC_Os01g56370OsAffx.28228.1.S1_x_at1/111+32811584..32816819expressed protein
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26864.1.S1_at--968--9892Chr01:32812054..32812078 (25 bp)
TACTGTTTTTGCCACTAAGCCAAGG
NONE
Os.26864.1.S1_at--783--2651Chr01:32802785..32802809 (25 bp)
AAGCCAAGGATCATCTCACGTTCGT
LOC_Os01g56350
Os.26864.1.S1_at--936--9511Chr01:32802798..32802822 (25 bp)
TCTCACGTTCGTCATTCATTTGTTT
LOC_Os01g56350
Os.26864.1.S1_at--292--10551Chr01:32802812..32802836 (25 bp)
TTCATTTGTTTTTTAGCCCTAGCGA
LOC_Os01g56350
Os.26864.1.S1_at--1134--7592Chr01:32802978..32803002 (25 bp)
GGGAACTTACTTCTGGAGGTCCATA
LOC_Os01g56350
Os.26864.1.S1_at--651--3192Chr01:32812305..32812329 (25 bp)
CAATGAAGACAACTGGATGCCCACA
NONE
Os.26864.1.S1_at--651--2072Chr01:32812327..32812351 (25 bp)
ACAAAACTCCACCTGTTCAACTGGG
NONE
Os.26864.1.S1_at--144--2572Chr01:32812345..32812369 (25 bp)
AACTGGGCCGATCATGTTGGAGAAT
NONE
Os.26864.1.S1_at--88--1612Chr01:32812408..32812432 (25 bp)
AGCTGCTGCCTGTTTGATTCACAAG
NONE
Os.26864.1.S1_at--846--8392Chr01:32803206..32803230 (25 bp)
GGCGCTGTAATGCTCTTTCTAGGAA
LOC_Os01g56350
Os.26864.1.S1_at--188--5311Chr01:32803236..32803260 (25 bp)
GAAGTTAACCACTGCCAACAACTGG
LOC_Os01g56350
Target Sequence 
TACTGTTTTTGCCACTAAGCCAAGGATCATCTCACGTTCGTCATTCATTTGTTTTTTAGCCCTAGCGACAAAAGTGAGAT
ACTCATAGCAAAAACAAGGGAACTTACTTCTGGAGGTCCATAGCCGCTAGGGGCAATGAAGACAACTGGATGCCCACAAA
ACTCCACCTGTTCAACTGGGCCGATCATGTTGGAGAATGATATGGTAGTATGAGAGATCATACGATGGAAGATAGCAGCT
GCTGCCTGTTTGATTCACAAGTTGCAATGATATTGGGAACAAAGAAATCCACAGGGGATGTTTTTGGCGCATGGCTCAAA
ATTTGGCGCTGTAATGCTCTTTCTAGGAAACAAGGAAGTTAACCACTGCCAACAACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis