Browse Element(s) Details


Os.47886.1.S1_at

Description gb:AK109784.1
DB_XREF= gi:32994993
TID=Os.47886.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C09, full insert sequence.
FL= gb:AK109784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4749011/11multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g563801/11Tyrosine/DOPA decarboxylase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47446Os.12289.1.S1_at10/115+27095954..27100503Double-stranded DNA-binding domain containing protein, expressed
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47460NANA5+27110507..27113179hypothetical protein
LOC_Os05g47470Os.5815.1.S1_at11/115+27114902..27116123expressed protein
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47540Os.17921.1.S1_at11/115+27146140..27150431Phosphoethanolamine N-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0004837molecular_functiontyrosine decarboxylase activity
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47886.1.S1_at--817--8291Chr05:27126212..27126236 (25 bp)
GGCTACGACACCTGCGCCGGCGAGA
LOC_Os05g47490
Os.47886.1.S1_at--440--9431Chr05:27126405..27126429 (25 bp)
TCGTGGTGGCTCACCGGCTGTCGAC
LOC_Os05g47490
Os.47886.1.S1_at--968--5752Chr05:27126443..27126467 (25 bp)
GACGTGATCGCCGTCCTCAGGGACG
LOC_Os05g47490
Os.47886.1.S1_at--929--2731Chr05:27126509..27126533 (25 bp)
AAGAAGGATGGCGTGTACGCTTCGT
LOC_Os05g47490
Os.47886.1.S1_at--257--9951Chr05:27126524..27126548 (25 bp)
TACGCTTCGTTGGTGGAGCTCCGCA
LOC_Os05g47490
Os.47886.1.S1_at--855--691Chr05:27126548..27126572 (25 bp)
ATGAGCTCCGAACGCGCCGGTGACT
LOC_Os05g47490
Os.47886.1.S1_at--602--2671Chr05:27126575..27126599 (25 bp)
AAGCCCTCGTGACCATGAGCACACG
LOC_Os05g47490
Os.47886.1.S1_at--801--691Chr05:27126589..27126613 (25 bp)
ATGAGCACACGGTGGTTGCCGTCAC
LOC_Os05g47490
Os.47886.1.S1_at--814--4771Chr05:27126617..27126641 (25 bp)
GCTGCTGCATGCCAAGACTGTACAT
LOC_Os05g47490
Os.47886.1.S1_at--378--6611Chr05:27126644..27126668 (25 bp)
GATTGGGAGTAAGGCTGCGTTCTTT
LOC_Os05g47490
Os.47886.1.S1_at--340--9152Chr05:27126659..27126683 (25 bp)
TGCGTTCTTTCTTCTTGTCAACAGT
LOC_Os05g47490
Target Sequence 
GGCTACGACACCTGCGCCGGCGAGAGGGACGTCCAGCTCTCCGGCGGGCAGAAGCAGCGCGTGGCCATCGCGAGGGCCAT
CCTCAAGGACCCCAGGATCCTCCTCCTCGACGAGGCGACGAGCGCGCTGGACGCCGAGTCGGAGCGCGCCGTCCAGGCGG
CGCTGGAGTCGGTGATGGTCGGCCGGACGACGGTCGTGGTGGCTCACCGGCTGTCGACGATCAGGGGCGCCGACGTGATC
GCCGTCCTCAGGGACGGCGAGGTCGTGGCCACGGGGAGGCACGTGGAGCTGATGGCGAAGAAGGATGGCGTGTACGCTTC
GTTGGTGGAGCTCCGCATGAGCTCCGAACGCGCCGGTGACTCCAAGCCCTCGTGACCATGAGCACACGGTGGTTGCCGTC
ACCGTGCTGCTGCATGCCAAGACTGTACATAGGATTGGGAGTAAGGCTGCGTTCTTTCTTCTTGTCAACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis