Browse Element(s) Details


OsAffx.15135.1.S1_at

Description tigr:9633.m04422
TID=OsAffx.15135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4750011/11multidrug resistance protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47460NANA5+27110507..27113179hypothetical protein
LOC_Os05g47470Os.5815.1.S1_at11/115+27114902..27116123expressed protein
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47540Os.17921.1.S1_at11/115+27146140..27150431Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15135.1.S1_at--744--6371Chr05:27133721..27133745 (25 bp)
GATCCTGATTCTGGTGTAATCTTAT
LOC_Os05g47500
OsAffx.15135.1.S1_at--1045--4371Chr05:27133810..27133834 (25 bp)
CCAAGAACCAGTGCTTTTCAATGAT
LOC_Os05g47500
OsAffx.15135.1.S1_at--839--6471Chr05:27133832..27133856 (25 bp)
GATACGATCCGTGCCAACATAGCTT
LOC_Os05g47500
OsAffx.15135.1.S1_at--532--1351Chr05:27133885..27133909 (25 bp)
AGAGATTGTGGCAGCTGCTAAGGCA
LOC_Os05g47500
OsAffx.15135.1.S1_at--639--5051Chr05:27133907..27133931 (25 bp)
GCAGCAAATGCCCACGAGTTCATAT
LOC_Os05g47500
OsAffx.15135.1.S1_at--288--9991Chr05:27134007..27134031 (25 bp)
TAGCCATTGCAAGGGCCATCGTCAA
LOC_Os05g47500
OsAffx.15135.1.S1_at--608--4311Chr05:27134022..27134046 (25 bp)
CCATCGTCAAGGATCCCAGGATACT
LOC_Os05g47500
OsAffx.15135.1.S1_at--312--7971Chr05:27134032..27134056 (25 bp)
GGATCCCAGGATACTACTCCTAGAT
LOC_Os05g47500
OsAffx.15135.1.S1_at--784--511Chr05:27134093..27134117 (25 bp)
ATCGTTCAAGATGCACTGGACCATG
LOC_Os05g47500
OsAffx.15135.1.S1_at--513--8131Chr05:27134130..27134154 (25 bp)
GGACAACCGTTGTTGTTGCACACCG
LOC_Os05g47500
OsAffx.15135.1.S1_at--1127--3731Chr05:27134158..27134182 (25 bp)
CTCAACAATCCAAGGCGCTGATATT
LOC_Os05g47500
Target Sequence 
GATCCTGATTCTGGTGTAATCTTATTAGATGGTGTAGAAATCAAGAAACTAGAGATCAGTTGGTTGAGGGACCAGATGGG
ATTAGTTAGCCAAGAACCAGTGCTTTTCAATGATACGATCCGTGCCAACATAGCTTATGGAAAGAATGAAGAAGTAACTG
AGGAAGAGATTGTGGCAGCTGCTAAGGCAGCAAATGCCCACGAGTTCATATCAAGTATGCCAGAGGGGTACAGCACCAGT
GTCGGAGAGAGGGGAACCCAATTATCAGGTGGGCAAAAACAACGAATAGCCATTGCAAGGGCCATCGTCAAGGATCCCAG
GATACTACTCCTAGATGAGGCGACGAGCGCATTAGATGCTGAGTCAGAGCGCATCGTTCAAGATGCACTGGACCATGTGA
TGGTTGGAAGGACAACCGTTGTTGTTGCACACCGCCTCTCAACAATCCAAGGCGCTGATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis