Browse Element(s) Details


Os.17921.1.S1_at

Description gb:CB679719
DB_XREF= gi:29683444
DB_XREF=OSJNEf03J05.r
CLONE=OSJNEf03J05
TID=Os.17921.1
CNT=18
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.17921 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_177501.1 (A.thaliana) phosphoethanolamine N-methyltransferase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4754011/11Phosphoethanolamine N-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47540Os.17921.1.S1_at11/115+27146140..27150431Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed
LOC_Os05g47560Os.38365.1.S1_a_at11/115+27162057..27166164Serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0000234molecular_functionphosphoethanolamine N-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17921.1.S1_at--841--911Chr05:27146978..27147002 (25 bp)
AGGCTATGACCTCCACGATGTGAAG
LOC_Os05g47540
Os.17921.1.S1_at--685--1231Chr05:27146662..27146686 (25 bp)
AGTTCCTGCGTGTTCTTCAAAGGGA
LOC_Os05g47540
Os.17921.1.S1_at--193--8511Chr05:27146512..27146626 (25 bp)
TGGCAGACTTCACCCAGGAGGACTA
LOC_Os05g47540
Os.17921.1.S1_at--747--3351Chr05:27146502..27146522 (21 bp)
CACCCAGGAGGACTACGATGACATT
LOC_Os05g47540
Os.17921.1.S1_at--677--671Chr05:27146485..27146509 (25 bp)
ATGACATTGTGAACGGCTGGAACGC
LOC_Os05g47540
Os.17921.1.S1_at--311--2431Chr05:27146374..27146398 (25 bp)
AAAACGGGTGCTGCTGTTGTTGGCT
LOC_Os05g47540
Os.17921.1.S1_at--489--8331Chr05:27146353..27146377 (25 bp)
GGCTGTGTTAACTAGTACTCCTACT
LOC_Os05g47540
Os.17921.1.S1_at--293--9912Chr10:20367782..20368074 (25 bp)
TACTCCTACTAGATCTGTTGTTGCA
NONE
Os.17921.1.S1_at--659--10791Chr05:27146321..27146345 (25 bp)
TTGTTGCAGATTTATTTGTGCGCCC
LOC_Os05g47540
Os.17921.1.S1_at--865--7391Chr05:27146228..27146252 (25 bp)
GTGATGTACGTTAAACTCAGTCTGT
LOC_Os05g47540
Os.17921.1.S1_at--872--10151Chr05:27146190..27146214 (25 bp)
TATCGTGCGTATTTGGTATGGAACT
LOC_Os05g47540
Target Sequence 
AGGCTATGACCTCCACGATGTGAAGACTTACGGAAAGATGCTTGAGGATGCTGGTTTCCATCATGTCATTGCTGAAGACC
GCACGGACCAGTTCCTGCGTGTTCTTCAAAGGGAGCTTGCTGAAGTTGAGAAGAACAAAGAAGCCTTCNTGGCAGACTTC
ACCCAGGAGGACTACGATGACATTGTGAACGGCTGGAACGCGAAGCTGAAGCGGAGCTCTGCCGGTGAGCAGAGGTGGGG
GCTGTTCATTGCAACCAAATGATTCAGAAGCAGAGAGGGTTCAGAATAAAACGGGTGCTGCTGTTGTTGGCTGTGTTAAC
TAGTACTCCTACTAGATCTGTTGTTGCAGATTTATTTGTGCGCCCCNATTGGTAGTTTGTTTGTGTGTGATGTANNNTTC
CAGTTTTAGAGGACGGCCANATGTTCCATGTGACGTGATGTACGTTAAACTCAGTCTGTTTAAAGTATGTATTATCGTGC
GTATTTGGTATGGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis