Browse Element(s) Details


OsAffx.27351.1.S1_at

Description tigr:9633.m04423
TID=OsAffx.27351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4751011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47460NANA5+27110507..27113179hypothetical protein
LOC_Os05g47470Os.5815.1.S1_at11/115+27114902..27116123expressed protein
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47540Os.17921.1.S1_at11/115+27146140..27150431Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed
LOC_Os05g47560Os.38365.1.S1_a_at11/115+27162057..27166164Serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27351.1.S1_at--473--10631Chr05:27136515..27136539 (25 bp)
TTCGACATGGAGTACCGCGGGTGCC
LOC_Os05g47510
OsAffx.27351.1.S1_at--595--9351Chr05:27136516..27136540 (25 bp)
TCGACATGGAGTACCGCGGGTGCCA
LOC_Os05g47510
OsAffx.27351.1.S1_at--166--4851Chr05:27136660..27136684 (25 bp)
GCTACAACATCCTGATCAGGTGCCT
LOC_Os05g47510
OsAffx.27351.1.S1_at--26--2211Chr05:27136663..27136687 (25 bp)
ACAACATCCTGATCAGGTGCCTGTG
LOC_Os05g47510
OsAffx.27351.1.S1_at--1157--2091Chr05:27136666..27136690 (25 bp)
ACATCCTGATCAGGTGCCTGTGCGA
LOC_Os05g47510
OsAffx.27351.1.S1_at--41--571Chr05:27136668..27136692 (25 bp)
ATCCTGATCAGGTGCCTGTGCGACG
LOC_Os05g47510
OsAffx.27351.1.S1_at--670--9251Chr05:27136669..27136693 (25 bp)
TCCTGATCAGGTGCCTGTGCGACGC
LOC_Os05g47510
OsAffx.27351.1.S1_at--1016--9371Chr05:27136726..27136750 (25 bp)
TCGAGATGCAGCTCAGGGGCACCGT
LOC_Os05g47510
OsAffx.27351.1.S1_at--1162--5031Chr05:27136867..27136891 (25 bp)
GCACCTTCAGGCACCTTGCGAGAGG
LOC_Os05g47510
OsAffx.27351.1.S1_at--286--1751Chr05:27136869..27136893 (25 bp)
ACCTTCAGGCACCTTGCGAGAGGGC
LOC_Os05g47510
OsAffx.27351.1.S1_at--933--10511Chr05:27136872..27136896 (25 bp)
TTCAGGCACCTTGCGAGAGGGCTCG
LOC_Os05g47510
Target Sequence 
TTCGACATGGAGTACCGCGGGTGCCAGGCCGACGTGGTGAACTACGGCGTGCTGATGAGCTCCCGCGCGAGGCACGGCGA
CGCCGACGGCGTCAGGGAGCTCCTCTCCGCCATGCGCAAGCGGAAGCTCAAGCCCGACGACGCGAGCTACAACATCCTGA
TCAGGTGCCTGTGCGACGCCGGCAGGGCCGACGAGGCGCACAGGGCGCTGCTCGAGATGCAGCTCAGGGGCACCGTGCCG
GGCGCCGCCACGTACCGCGTCCTCGTCGACGGGTGCTGCAGGGCTCGCGACTTCGACCTGGGTCTACGGGTCTTCAACGC
GATGATGGCGAGCGGACACTGCCCCCAAGCTCGCACCTTCAGGCACCTTGCGAGAGGGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis