Browse Element(s) Details


Os.8798.1.S1_at

Description gb:AK072302.1
DB_XREF= gi:32982325
TID=Os.8798.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.8798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023B03, full insert sequence.
FL= gb:AK103211.1 gb:AK072302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4755011/11Clathrin assembly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47540Os.17921.1.S1_at11/115+27146140..27150431Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed
LOC_Os05g47560Os.38365.1.S1_a_at11/115+27162057..27166164Serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed
LOC_Os05g47580Os.51913.1.S1_at11/115+27178372..27179722expressed protein
LOC_Os05g47590OsAffx.4645.1.S1_at11/115+27181198..27182611hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8798.1.S1_at--91--5031Chr05:27154002..27154026 (25 bp)
GCAGTTATATGGTTCTTCAGCTCCC
LOC_Os05g47550
Os.8798.1.S1_at--620--9311Chr05:27153981..27154005 (25 bp)
TCCCAACCCGTTCATGTCAAATGAT
LOC_Os05g47550
Os.8798.1.S1_at--222--7071Chr05:27153950..27153974 (25 bp)
GTAATGTCGAACCAAGTTGCTCCTC
LOC_Os05g47550
Os.8798.1.S1_at--887--6311Chr05:27153870..27153894 (25 bp)
GATGCAAGCGAATCCCTTTGGACCA
LOC_Os05g47550
Os.8798.1.S1_at--174--10871Chr05:27153797..27153821 (25 bp)
TTGGATTCTGGTTTTGGCCCATTCC
LOC_Os05g47550
Os.8798.1.S1_at--557--8211Chr05:27153731..27153755 (25 bp)
GGCACCCAACTTCTGTAGGTTGCAT
LOC_Os05g47550
Os.8798.1.S1_at--1055--5351Chr05:27153702..27153726 (25 bp)
GAAGAGCATATCGTGTCCTAGCAAA
LOC_Os05g47550
Os.8798.1.S1_at--297--10211Chr05:27153658..27153682 (25 bp)
TATTATGCATTGTGCCTGGCCTTAC
LOC_Os05g47550
Os.8798.1.S1_at--1069--8451Chr05:27153642..27153666 (25 bp)
TGGCCTTACTTGTATGTCACTCGTG
LOC_Os05g47550
Os.8798.1.S1_at--170--10791Chr05:27153614..27153638 (25 bp)
TTGATTTTGTGTATTGGCCTCGCCA
LOC_Os05g47550
Os.8798.1.S1_at--983--10071Chr05:27153556..27153580 (25 bp)
TAGTGGCCTGTGTAGCATCAGTTAT
LOC_Os05g47550
Target Sequence 
GCAGTTATATGGTTCTTCAGCTCCCAACCCGTTCATGTCAAATGATCCTTTCGTAATGTCGAACCAAGTTGCTCCTCCAN
CATCGGTTCAAATGGCTGCCATGTCTCAGCAGCATCAACAGATACCAACTATGATGCAAGCGAATCCCTTTGGACCACCA
ATGCAACCGCAGCATGTGGGCATGGGCCCTGCAACAAACCCATTTTTGGATTCTGGTTTTGGCCCATTCCCAATGGCGAA
CAACGGGCATCAGCAAGCCAACCCATTTGGTGGCACCCAACTTCTGTAGGTTGCATAGAAGAAGAGCATATCGTGTCCTA
GCAAATGCGATTTTCGTGTGATTATATTATGCATTGTGCCTGGCCTTACTTGTATGTCACTCGTGTAATTGATTTTGTGT
ATTGGCCTCGCCACACGGGGCTGGCAAGCAACCCTTGTAAAGAAATTAGTGGCCTGTGTAGCATCAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis