Browse Element(s) Details


OsAffx.4645.1.S1_at

Description tigr:9633.m04431
TID=OsAffx.4645.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4759011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed
LOC_Os05g47560Os.38365.1.S1_a_at11/115+27162057..27166164Serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed
LOC_Os05g47580Os.51913.1.S1_at11/115+27178372..27179722expressed protein
LOC_Os05g47590OsAffx.4645.1.S1_at11/115+27181198..27182611hypothetical protein
LOC_Os05g47600NANA5+27188088..27188718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610Os.43567.1.S1_x_at4/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_at2/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.3.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47620OsAffx.27354.1.S1_at11/115+27202157..27203310hypothetical protein
LOC_Os05g47630Os.7968.1.S1_at4/115+27203909..27206342peptidyl-tRNA hydrolase family protein, expressed
LOC_Os05g47640Os.9175.1.S1_at11/115+27207287..27209237Threonine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4645.1.S1_at--342--1851Chr05:27182031..27182055 (25 bp)
ACGACAACGAGGCACTTGGCAACAT
LOC_Os05g47590
OsAffx.4645.1.S1_at--326--10851Chr05:27182046..27182070 (25 bp)
TTGGCAACATCGTCGCACCGAACGT
LOC_Os05g47590
OsAffx.4645.1.S1_at--959--2452Chr05:27182093..27182117 (25 bp)
AACAACGGTGGTAATGCTCCTCCAG
LOC_Os05g47590
OsAffx.4645.1.S1_at--551--7371Chr05:27182184..27182208 (25 bp)
GTGACATCAAAACCATCCGAGGCGA
LOC_Os05g47590
OsAffx.4645.1.S1_at--511--3491Chr05:27182218..27182242 (25 bp)
CAGGCGCTGCGACACACACAAAATG
LOC_Os05g47590
OsAffx.4645.1.S1_at--144--6451Chr05:27182242..27182266 (25 bp)
GATCAAATACGACATTGCCACCAAG
LOC_Os05g47590
OsAffx.4645.1.S1_at--796--7411Chr05:27182276..27182300 (25 bp)
GTGTCCAACTACTTCCGTCAAAATT
LOC_Os05g47590
OsAffx.4645.1.S1_at--208--2091Chr05:27182305..27182329 (25 bp)
ACATATGAATGACCGCGCACAGGCG
LOC_Os05g47590
OsAffx.4645.1.S1_at--383--5471Chr05:27182353..27182377 (25 bp)
GAACTGCGACAATTGCGGCCATGAG
LOC_Os05g47590
OsAffx.4645.1.S1_at--394--4011Chr05:27182387..27182411 (25 bp)
CGTCCAGTGATAGCCGCCGAGAAGG
LOC_Os05g47590
OsAffx.4645.1.S1_at--1130--8051Chr05:27182443..27182467 (25 bp)
GGAGACACTAGGTTTGCGCATGCTT
LOC_Os05g47590
Target Sequence 
ACGACAACGAGGCACTTGGCAACATCGTCGCACCGAACGTCCCGAACGGTGGCGGCAACGACAACAACGGTGGTAATGCT
CCTCCAGATCCACCATATCCTTGGGCTACCAATGAAGCAGCCAAACACCACTCTCTCGCCGAGCTCACTCGCCGTGACAT
CAAAACCATCCGAGGCGAGGCTCGGTGCAGGCGCTGCGACACACACAAAATGATCAAATACGACATTGCCACCAAGTTTC
AAGAGGTGTCCAACTACTTCCGTCAAAATTACCAACATATGAATGACCGCGCACAGGCGCGGTGGATGAACCCCGTCGTG
CCGAACTGCGACAATTGCGGCCATGAGAAATGCATGCGTCCAGTGATAGCCGCCGAGAAGGAGCGTATCAACTGGTTGTT
CCTACTGCTTGGGGAGACACTAGGTTTGCGCATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis