Browse Element(s) Details


Os.51913.1.S1_at

Description gb:AK064256.1
DB_XREF= gi:32974274
TID=Os.51913.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C10, full insert sequence.
FL= gb:AK064256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4758011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed
LOC_Os05g47560Os.38365.1.S1_a_at11/115+27162057..27166164Serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed
LOC_Os05g47580Os.51913.1.S1_at11/115+27178372..27179722expressed protein
LOC_Os05g47590OsAffx.4645.1.S1_at11/115+27181198..27182611hypothetical protein
LOC_Os05g47600NANA5+27188088..27188718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610Os.43567.1.S1_x_at4/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_at2/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.3.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47620OsAffx.27354.1.S1_at11/115+27202157..27203310hypothetical protein
LOC_Os05g47630Os.7968.1.S1_at4/115+27203909..27206342peptidyl-tRNA hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51913.1.S1_at--1085--8391Chr05:27179138..27179162 (25 bp)
GGCGCTGCGACACTCGCAAGATGAT
LOC_Os05g47580
Os.51913.1.S1_at--145--6611Chr05:27179160..27179184 (25 bp)
GATTGTCTACAACATTGCCACCAAG
LOC_Os05g47580
Os.51913.1.S1_at--461--10651Chr05:27179206..27179230 (25 bp)
TTCCGCCAGAACTACCAGCATATGA
LOC_Os05g47580
Os.51913.1.S1_at--851--9951Chr05:27179218..27179242 (25 bp)
TACCAGCATATGAATGACCGTGCGC
LOC_Os05g47580
Os.51913.1.S1_at--831--4511Chr05:27179268..27179292 (25 bp)
GCCGAACTGCGATAGTTGTGGCCAT
LOC_Os05g47580
Os.51913.1.S1_at--1023--71Chr05:27179314..27179338 (25 bp)
ATTGCCGCTGAGAAGGAACGTATCA
LOC_Os05g47580
Os.51913.1.S1_at--436--2911Chr05:27179437..27179462 (25 bp)
AAGGATAGGTGCTCTTCTCAACCTA
LOC_Os05g47580
Os.51913.1.S1_at--452--10331Chr05:27179560..27179584 (25 bp)
TTTAAAGATGCAACCATGCCGTGGT
LOC_Os05g47580
Os.51913.1.S1_at--850--4491Chr05:27179577..27179601 (25 bp)
GCCGTGGTTGTTATATTAGGTTCAT
LOC_Os05g47580
Os.51913.1.S1_at--1073--6091Chr05:27179605..27179629 (25 bp)
GAGTCTCTATCTTTTAGTCTCGTCT
LOC_Os05g47580
Os.51913.1.S1_at--605--4011Chr05:27179625..27179649 (25 bp)
CGTCTCTATAAGTATTTCACGATAT
LOC_Os05g47580
Target Sequence 
GGCGCTGCGACACTCGCAAGATGATTGTCTACAACATTGCCACCAAGTTTCGAGAGGTGTCCGACTACTTCCGCCAGAAC
TACCAGCATATGAATGACCGTGCGCAGGCGCGGTGGATGAATCCCGTCGTGCCGAACTGCGATAGTTGTGGCCATGAGAG
ATGCATGCGTCCGGTGATTGCCGCTGAGAAGGAACGTATCAACTGGTTGTTCCTACTGCTCGGAGAGACACTGGGTTTGT
GCACGCTTGATCAGCTCAAGTACTTCTGTGCGCACACCAACCGGCATCGCACCGGCGCCAAGGATAGGTGCTCTTCTCAA
CCTACGAAGAGCTATGCAACCAACTTGCTCCTGGGCTAATCACGGGGCATGATCAGTTGGGGATGCGTTAGCTATTAATT
TTTTCGGTTGTTAATTTAGACTTTAAAGATGCAACCATGCCGTGGTTGTTATATTAGGTTCATCTAGAGTCTCTATCTTT
TAGTCTCGTCTCTATAAGTATTTCACGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis