Browse Element(s) Details


Os.7968.1.S1_at

Description gb:AK061016.1
DB_XREF= gi:32971034
TID=Os.7968.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B10, full insert sequence.
FL= gb:AK061016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g476304/11peptidyl-tRNA hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47580Os.51913.1.S1_at11/115+27178372..27179722expressed protein
LOC_Os05g47590OsAffx.4645.1.S1_at11/115+27181198..27182611hypothetical protein
LOC_Os05g47600NANA5+27188088..27188718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610Os.43567.1.S1_x_at4/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_at2/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.3.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47620OsAffx.27354.1.S1_at11/115+27202157..27203310hypothetical protein
LOC_Os05g47630Os.7968.1.S1_at4/115+27203909..27206342peptidyl-tRNA hydrolase family protein, expressed
LOC_Os05g47640Os.9175.1.S1_at11/115+27207287..27209237Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os05g47650OsAffx.15137.1.S1_at11/115+27219714..27221293DNA-binding protein RAV1, putative, expressed
LOC_Os05g47660OsAffx.15138.1.S1_at11/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_x_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.26910.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0004045molecular_functionaminoacyl-tRNA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7968.1.S1_at--325--10431Chr05:27205897..27205994 (25 bp)
TTAGGATTGGTATTGGGCGCCCCAC
LOC_Os05g47630
Os.7968.1.S1_at--427--8651Chr05:27205995..27206019 (25 bp)
TGGGAAGTTGGATGCTATCGGCTTT
LOC_Os05g47630
Os.7968.1.S1_at--613--2891Chr05:27206289..27206313 (25 bp)
AAGGGTGCAACTTTTGTGAACACTC
LOC_Os05g47630
Os.7968.1.S1_at--924--5491Chr05:27206306..27206330 (25 bp)
GAACACTCCACAGCCATCAGAAATG
LOC_Os05g47630
Os.7968.1.S1_at--92--351Chr05:27206335..27206359 (25 bp)
ATAAATGAAAGTGCCTCCCTTCAGA
NONE
Os.7968.1.S1_at--595--9311Chr05:27206350..27206374 (25 bp)
TCCCTTCAGAGGTTCAGATTGCTTA
NONE
Os.7968.1.S1_at--69--5391Chr05:27206414..27206438 (25 bp)
GAAGCACCCAGAATAGCTGCACAAA
NONE
Os.7968.1.S1_at--1079--8091Chr05:27206445..27206469 (25 bp)
GGACCATTCTCCTTGAGCATATGTA
NONE
Os.7968.1.S1_at--353--4831Chr05:27206519..27206543 (25 bp)
GCTCATCGCAACTCTACTTATACAT
NONE
Os.7968.1.S1_at--1080--6451Chr05:27206571..27206595 (25 bp)
GATCAATTCATTGGCTTCCTATCTT
NONE
Os.7968.1.S1_at--914--4911Chr05:27206584..27206606 (23 bp)
GCTTCCTATCTTGCCTGTTTTCAAA
NONE
Target Sequence 
TTAGGATTGGTATTGGGCGCCCCACTGGGAAGTTGGATGCTATCGGCTTTNGTTCTAAGGTCATTCACCAAGGAAGAANC
AAGAANGAGCTTAATTTNGACGATCAATAGGAGCTTGCAAGCAGTAAGGATAATGCTACTCGAAGGATTCAACAAGGGTG
CAACTTTTGTGAACACTCCACAGCCATCAGAAATGCTAAATAAATGAAAGTGCCTCCCTTCAGAGGTTCAGATTGCTTAG
GGATTCAAATGAAGAGTGTACAATAGCTGTTGTTGTTAGAAGCACCCAGAATAGCTGCACAAAGCACAAGGACCATTCTC
CTTGAGCATATGTATCCCAATTGATTTGTAAAGGTGTTCATTTACAACACACAACAAAATGTTGCTCATCGCAACTCTAC
TTATACATGATTCATTGTTAACAAATATACTACTCGATCAATTCATTGGCTTCCTATCTTGCCTGTTTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis