Browse Element(s) Details


Os.9175.1.S1_at

Description gb:AK101669.1
DB_XREF= gi:32986878
TID=Os.9175.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058D04, full insert sequence.
FL= gb:AK101669.1 gb:AK109478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4764011/11Threonine synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47590OsAffx.4645.1.S1_at11/115+27181198..27182611hypothetical protein
LOC_Os05g47600NANA5+27188088..27188718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610Os.43567.1.S1_x_at4/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_at2/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.3.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47610OsAffx.22848.4.S1_x_at1/115+27192670..27199938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g47620OsAffx.27354.1.S1_at11/115+27202157..27203310hypothetical protein
LOC_Os05g47630Os.7968.1.S1_at4/115+27203909..27206342peptidyl-tRNA hydrolase family protein, expressed
LOC_Os05g47640Os.9175.1.S1_at11/115+27207287..27209237Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os05g47650OsAffx.15137.1.S1_at11/115+27219714..27221293DNA-binding protein RAV1, putative, expressed
LOC_Os05g47660OsAffx.15138.1.S1_at11/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_x_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.10733.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47660OsAffx.26910.1.S1_at1/115+27227844..27231049Lipid phosphate phosphatase 2, putative, expressed
LOC_Os05g47670Os.20644.1.S1_at11/115+27234153..27237274Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009088biological_processthreonine biosynthesis
GO:0004795molecular_functionthreonine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9175.1.S1_at--655--671Chr05:27208660..27208684 (25 bp)
ATGAACGCAATGTCGCTCGCTGATC
LOC_Os05g47640
Os.9175.1.S1_at--388--8851Chr05:27208680..27208704 (25 bp)
TGATCGCACTGGCATGTTTGCTTGC
LOC_Os05g47640
Os.9175.1.S1_at--888--6931Chr05:27208780..27208804 (25 bp)
GTAGTCGTCAGCACAGCTCATGGTC
LOC_Os05g47640
Os.9175.1.S1_at--405--7811Chr05:27208801..27208825 (25 bp)
GGTCTGAAGTTCTCACAGTCCAAGA
LOC_Os05g47640
Os.9175.1.S1_at--748--871Chr05:27208855..27208879 (25 bp)
ATGGCCTGCAAGTATGCGAATCCCC
LOC_Os05g47640
Os.9175.1.S1_at--766--3791Chr05:27208947..27208971 (25 bp)
CTGAAGTGTGTTTGGCTAACTCCCC
LOC_Os05g47640
Os.9175.1.S1_at--188--6931Chr05:27208986..27209010 (25 bp)
GTATGTCAGTTGTCTTCTGCATCAA
LOC_Os05g47640
Os.9175.1.S1_at--27--6951Chr05:27209055..27209079 (25 bp)
GTAGTAGTATTGTAGGTCCCTGAAC
LOC_Os05g47640
Os.9175.1.S1_at--553--5431Chr05:27209076..27209100 (25 bp)
GAACCTTGAAGATCGTCCATGCTTG
LOC_Os05g47640
Os.9175.1.S1_at--225--1331Chr05:27209114..27209138 (25 bp)
AGAGGCTATCTCTTGTACCTGTTCT
LOC_Os05g47640
Os.9175.1.S1_at--264--4411Chr05:27209163..27209187 (25 bp)
GCGACTACCTTGTTGTTTGAAACTC
LOC_Os05g47640
Target Sequence 
ATGAACGCAATGTCGCTCGCTGATCGCACTGGCATGTTTGCTTGCCCGCATACTGGGGTTGCCCTCGCAGCNCTGTTCAA
GCTCCGTGACCAGCGCATCATCGGGCCAAATGACCGCACGGTAGTCGTCAGCACAGCTCATGGTCTGAAGTTCTCACAGT
CCAAGATCGACTACCATGACAGCAAGATCGAAGACATGGCCTGCAAGTATGCGAATCCCCCGGTCAGCGTGAAGGCTGAC
TTCGGTGCCGTCATGGATGTCCTCAAGAAGAGGCTCAAGGGTAAGCTCTGAAGTGTGTTTGGCTAACTCCCCTCCAATCA
ATTGCTGTATGTCAGTTGTCTTCTGCATCAAATTCGAATGCGGCGGGTGACTGTGGAGCGATGATTCGTCGATTTGTAGT
AGTATTGTAGGTCCCTGAACCTTGAAGATCGTCCATGCTTGAGAGTAAAGATTGAGAGGCTATCTCTTGTACCTGTTCTG
TGTTGTGTGTGGGTGGGTAATAAGCGACTACCTTGTTGTTTGAAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis