Browse Element(s) Details


OsAffx.27352.1.S1_at

Description tigr:9633.m04425
TID=OsAffx.27352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Uncharacterized BCR, COG1963, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g475309/11Uncharacterized BCR, COG1963 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47500OsAffx.15135.1.S1_at11/115+27128642..27134296multidrug resistance protein 1 homolog, putative, expressed
LOC_Os05g47510OsAffx.27351.1.S1_at11/115+27135744..27137066hypothetical protein
LOC_Os05g47520OsAffx.15136.1.S1_at11/115+27139430..27140372hypothetical protein
LOC_Os05g47530Os.51330.1.S1_at11/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47530OsAffx.27352.1.S1_at9/115+27141585..27143907Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os05g47540Os.17921.1.S1_at11/115+27146140..27150431Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os05g47550Os.8798.1.S1_at11/115+27153385..27160178Clathrin assembly protein, putative, expressed
LOC_Os05g47560Os.38365.1.S1_a_at11/115+27162057..27166164Serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27352.1.S1_at--356--9251NONE
TCCTCGCCATCTGGTTAAAGGAGAA
NONE
OsAffx.27352.1.S1_at--512--5171Chr05:27142995..27143019 (25 bp)
GCAAGAAAGTTTCTCACTTCAGCTG
LOC_Os05g47530
OsAffx.27352.1.S1_at--281--9531Chr05:27142984..27143008 (25 bp)
TCTCACTTCAGCTGGAATTATTTCA
LOC_Os05g47530
OsAffx.27352.1.S1_at--682--5211Chr05:27142970..27142994 (25 bp)
GAATTATTTCATCCCTTTCTGCAAC
LOC_Os05g47530
OsAffx.27352.1.S1_at--385--191Chr05:27142965..27142989 (25 bp)
ATTTCATCCCTTTCTGCAACGGTGG
LOC_Os05g47530
OsAffx.27352.1.S1_at--400--6871Chr05:27142937..27142961 (25 bp)
GTTTGGCCGTGGCAGTCAGTCAACA
LOC_Os05g47530
OsAffx.27352.1.S1_at--547--7111Chr05:27142923..27142947 (25 bp)
GTCAGTCAACAAGAAGGCGGAGATA
LOC_Os05g47530
OsAffx.27352.1.S1_at--1054--3951Chr05:27142906..27142930 (25 bp)
CGGAGATAGTTCTTCATTCGCGCTG
LOC_Os05g47530
OsAffx.27352.1.S1_at--80--9571Chr05:27142896..27142920 (25 bp)
TCTTCATTCGCGCTGGCATTGGTTT
LOC_Os05g47530
OsAffx.27352.1.S1_at--1079--4931Chr05:27142882..27142905 (24 bp)
GCATTGGTTTTTGCTGCCGTTGTAA
LOC_Os05g47530
OsAffx.27352.1.S1_at--951--10271NONE
TTTGCTGCCGTTGTAATGTATGATG
NONE
Target Sequence 
TCCTCGCCATCTGGTTAAAGGAGAAGAGATGGGATGCAAGAAAGTTTCTCACTTCAGCTGGAATTATTTCATCCCTTTCT
GCAACGGTGGGGAGTTTGGCCGTGGCAGTCAGTCAACAAGAAGGCGGAGATAGTTCTTCATTCGCGCTGGCATTGGTTTT
TGCTGCCGTTGTAATGTATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis